Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 seq38667 105 8e-18 seq2 102 1e-16 seq7 86.0 7e-12 >seq6 Length=22682783 Score = 111 bits (122), Expect = 2e-19 Identities = 230/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || ||| || || || ||| |||| || |||||| Sbjct 20869804 CCAGGGACAGGAAAGACACTACTAGCAAAAGCAATTGCAGGAGAAGCAAAAGTTCCATTC 20869745 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || | || | || | || | ||||||||||||||||| ||||| ||| || Sbjct 20869744 TTTTCACTA-TCAGGTTCAGAATTCATTGAGATGTTTGTTGGTGTTGGTGCTTCAAGAGT 20869686 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||| | | ||| |||||| ||| ||| | | || ||||||||||| Sbjct 20869685 AAGAGATTTGTTTAACAAGGCCAAAGAAAATTCACCTTGTTTGATATTTATTGATGAGAT 20869626 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT---GCCAGCAAATGACGAGAGAGA 175550 |||||| || || ||| || || | | ||||| || ||||| || ||||| Sbjct 20869625 TGATGCTGTTGG-AAG--ACAGAGAGGTACAGGTATTGGTGGAGGGAATGATGAAAGAGA 20869569 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 ||||||| | ||||| | | || || |||||||| ||| | | ||||| || | Sbjct 20869568 ACAAACATTGAATCAGTTGTTGACTGAAATGGATGGTTTTAGTGGTAATACTGGTGTTAT 20869509 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||||||| || |||||| | || || |||||| Sbjct 20869508 TGTTATTGCTGCTACTAATAGACCTGAAATTCTTGAT 20869472 >seq38667 Length=153359 Score = 105 bits (116), Expect = 8e-18 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| || | ||| || || ||||||||| || |||||| || Sbjct 118662 CCAGGGACTGGTAAGACGCTATTAGCCAAGGCTATTGCGGGTGAAGCAGGTGTCCCGTTT 118721 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | ||| | | | ||||| ||||||||||| ||||| ||||| | || Sbjct 118722 TTCTCAAT-CTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCTTCTCGAGT 118780 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | || | | ||| || ||| || |||||||| || ||||||| || Sbjct 118781 TCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTTTTTGTTGATGAAAT 118840 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||||| ||||| | |||||| || |||| |||| || || || || || || Sbjct 118841 TGATGCTGTGGGAAGGCAACGAGGCACTGGAATTGGT---GGAGGGAACGATGAAAGGGA 118897 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 ||| || |||| ||||| | || || |||||||| ||||| Sbjct 118898 ACAGACCCTTAACCAACTTTTGACAGAAATGGATGGATTTGA 118939 Score = 100 bits (110), Expect = 3e-16 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| || | ||| || || ||||||||| || |||||| || Sbjct 113147 CCGGGGACTGGTAAGACGCTATTAGCCAAGGCTATTGCGGGTGAAGCAGGTGTCCCGTTT 113206 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | ||| | | | ||||| ||||||||||||||||| ||||| | || Sbjct 113207 TTCTCAAT-CTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGT 113265 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | || | | ||| ||||| || |||||||| || ||||||| || Sbjct 113266 TCGTGATATATTCAAGAAGGCCAAAGAAAACGCTCCTTGTATTGTTTTTGTTGATGAAAT 113325 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550 |||||| ||||| ||||| || |||| |||| || ||||| || || || Sbjct 113326 TGATGCTGTGGGAGGACAACGAGGCACTGGAATTGGT---GAAGAGAATGATGAAAGGGA 113382 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 ||| || | || ||||| | || || |||||||| ||||| | | || | || | Sbjct 113383 ACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGAGATCAT 113442 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || ||||| || || ||| | | || || ||||| Sbjct 113443 TGTCATTGCAGCAACCAATAGGGCTGACATTCTTGA 113478 >seq2 Length=32560536 Score = 102 bits (112), Expect = 1e-16 Identities = 178/256 (70%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 177590 CCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAA 177649 ||||||| |||||||| |||||||| | |||||||||||||| | |||||| ||||||| Sbjct 12172080 CCGTCGCTACAACATAATCATCAGCTTTCTCTTGTTGAAGCATCAACCACATCGCTTCAA 12172021 Query 177650 CATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACT 177709 |||| || ||| ||||| ||||| | ||| | | ||| || || || | || Sbjct 12172020 CATAATCACCAGCAAATCCCCAATCTCTTGAAGCTTGTAAGTTTCCAAG---AAACAGCT 12171964 Query 177710 --CTCTCTCA-CCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTGTGACAAAGT 177766 |||| | | || || ||| || || |||||| || |||| ||||| | Sbjct 12171963 TACTCTGTAACCCGATCTTGATTCTACCAACAGCACGAGTAATTTTTCTTGTCACAAAAT 12171904 Query 177767 CGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCAT 177826 |||||| | |||||||| || ||||| || |||||| || || | || |||| Sbjct 12171903 TCTCACCTCTGCGAGGTGATTCATGATTGAACAGAATTCCGTTACAAGCGAAAATTCCAT 12171844 Query 177827 AGGATTCTCGGTAATT 177842 | | ||| |||||||| Sbjct 12171843 ACGCTTCACGGTAATT 12171828 >seq7 Length=30551617 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || | || | || | || |||||| | ||| || ||| Sbjct 4917063 CCGGGAACAGGAAAGACGCTATTGGCGAGGGCGGTAGCCGGTGAAGCTGGTGTGCCGTTC 4917122 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| | || | | |||||||| ||||||||||||| ||||| |||||| Sbjct 4917123 TTTTCGTGTGCGGCTTCGGAGTTTGTGGAATTGTTTGTTGGTGTTGGTGCTTCTAGGGTT 4917182 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || ||| || || || ||||| || |||||||| Sbjct 4917183 AGGGATTTGTTTGAGAAGGC----GAAGTCGAAGGCGCCTTGCATTGTGTTTATTGATGA 4917238 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAG 175547 |||||||| || || | || | | ||||| |||| | ||||| ||||| Sbjct 4917239 AATTGATGCAGTTGGGAGACAGAGAGGAGCTGGACTTGGTGGT---GGGAATGATGAGAG 4917295 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||||||| |||||||| || | || ||||||||||| ||| Sbjct 4917296 GGAACAAACTATTAATCAGCTTTTGACTGAGATGGATGGTTTT 4917338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596278392006880