Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq28107 147 3e-30 seq29563 98.7 1e-15 seq6 87.8 2e-12 >seq28107 Length=123132 Score = 147 bits (162), Expect = 3e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8292 GAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTT 8351 |||||| || ||||| | ||| ||||| ||| ||| | || |||||||||||||| || Sbjct 15017 GAGTGAGCCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATT 14958 Query 8352 ATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCC 8411 |||||| || || ||||| | ||| ||||| || |||||||| || ||||||||||| || Sbjct 14957 ATGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACC 14898 Query 8412 ATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATAC 8471 ||| || || |||||||| | ||| || | ||||| ||||| | |||||| | || Sbjct 14897 ATCTGAAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAAC 14838 Query 8472 TGGAGCACTATATGCTACA 8490 ||||| |||||| ||| Sbjct 14837 CGGAGCTGAATATGCAACA 14819 >seq29563 Length=4854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 8325 CATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384 ||| || || |||||||||||||| |||||||| | || ||||| | ||| ||||| || Sbjct 4399 CATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAATCATAAAGTTGAA 4340 Query 8385 CGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||||| || || ||||||||||| ||||| || || |||||||||| ||| Sbjct 4339 AGTACCGGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATTGG 4286 >seq6 Length=22682783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| ||||| || ||| ||||||| | | ||||||||||| || || || ||| Sbjct 2048161 TAAGGACCGCCGTTGTATAACAACTCATCAACGGATGCAGCTTCCCATATTGGGTAAAAG 2048102 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATAC 8706 || || || ||||| |||| || | | |||||| | || || |||||||| || Sbjct 2048101 TGCAAACCGATAGCCGCAGAAGTAGGGATAATGGCACCAAAAATTATATTGTTTCCGTAA 2048042 Query 8707 ATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATA 8766 | | || || | ||||| |||||| ||| || ||||| || || |||||||| Sbjct 2048041 AGTAGAGATCCAGAAACAGACTCACGA--ACCATCAATATCTACTAAAGGGGCAGCAATG 2047984 Query 8767 AATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAAC 8826 || | | ||||| || || || | || ||| ||| ||||| | || || |||| Sbjct 2047983 AAAGTGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAATTCAAAAC 2047924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615561774467720