Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq38608 145 9e-30 seq1 98.7 1e-15 seq32521 87.8 2e-12 seq3 86.0 7e-12 seq38617 82.4 9e-11 >seq38608 Length=401930 Score = 145 bits (160), Expect = 9e-30 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 167846 ATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTG 167905 || ||||||| || || |||||||||||||| ||| | || ||||| ||||| || |||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 167906 AAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTA 167965 | |||||||| || ||||| || || | || |||||| |||| || ||| | || || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 167966 TCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCAC 168025 ||||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 168026 TATAA 168030 | ||| Sbjct 348742 TTTAA 348738 >seq1 Length=28142018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/357 (67%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 167110 GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGC--GTCCA 167167 |||||| | || || || || || || || ||||||||||||||| | || || | Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTC- 23237559 Query 167168 GTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGG 167227 ||| | || ||| ||||| | ||||||||||| |||||| | || | | | Sbjct 23237560 -CTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618 Query 167228 GTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTT--CGTCAGGTGGCT 167285 |||||||| | | || ||||||||| || | || | ||||| ||| | ||| Sbjct 23237619 CACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTG 23237676 Query 167286 CCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTT 167345 ||| | || || | ||| ||||||| || || ||||| || || | | || ||||| Sbjct 23237677 TCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTT 23237736 Query 167346 CATGCTTCGACAGTTTGAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTG 167404 ||| | || || |||||||||||| | ||| || | || || || ||||| || Sbjct 23237737 TATGTTACGTCAATTTGAACTTGCTTGATCTG-TTCAATTGCGGCCTTATAATGCAATCA 23237795 Query 167405 CTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTC 167461 | ||||| ||||| | || ||| || ||| || ||||| | ||||| | |||| Sbjct 23237796 CATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq32521 Length=1850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 167845 AATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTT 167904 || || ||||| || || |||||||||||||| ||| || ||||| ||||| || ||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 167905 GAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGG 167955 || |||||||| || ||||| || || | || |||||| |||| || ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 167831 TTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGG 167890 |||||||||| || || || ||||| || || || ||||||||||| ||| | | |||| Sbjct 10151963 TTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCACAGCGG 10151904 Query 167891 AGGATCCAGAGTTTGAAACTTTCTATACTAAAAACAT 167927 | ||||| || ||||| |||||||| || ||||| || Sbjct 10151903 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 10151867 >seq38617 Length=370667 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 167861 ATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTA 167920 ||||||||| |||||| ||| | || ||||| ||||| | ||||| |||||||| ||| Sbjct 75971 ATTTCGTTTTTCAAGAAATCTGTGCAGCGGAAGATCCTAA-TTTGAGACTTTCTACACTG 76029 Query 167921 AAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATG 167980 |||| || || | ||||||||| |||| || | | | || |||||||||||| Sbjct 76030 AAAATATTCTCTTAAATGAAGGTATTCGTGCGTAGATGAAGGCTCAAAATCAACCTCATG 76089 Query 167981 AGAACTTTGTGTTCCCAGAG 168000 | || || | ||||| ||| Sbjct 76090 AAAATCTTATATTCCCTGAG 76109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560974033804400