Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq28107 125 2e-24 seq29563 96.9 1e-15 >seq28107 Length=123132 Score = 125 bits (138), Expect = 2e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| || || ||||| || || ||||| | ||| || ||| | | || || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 ||||| ||||| |||| |||||| | || || || || || ||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || || ||||||||||| ||||||||||||||||| ||| ||||| | ||||| || || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 41797 CGTATTTGGTGG 41808 ||||| || || Sbjct 14999 TGTATTCGGCGG 15010 >seq29563 Length=4854 Score = 96.9 bits (106), Expect = 1e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41673 TTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACA 41732 |||| ||||| ||||| |||| |||||| | || || ||||| || ||||||| | Sbjct 4290 TTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTA 4349 Query 41733 TGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGG 41792 || | || || |||| |||||| ||||||||||||||||| ||||||||| | |||| | Sbjct 4350 TGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTATGTGTCG 4409 Query 41793 C 41793 | Sbjct 4410 C 4410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146146595904904