Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq28107 136 1e-27 seq29563 104 7e-18 seq6 102 2e-17 seq28688 100 8e-17 >seq28107 Length=123132 Score = 136 bits (150), Expect = 1e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 |||||| || || || || || || || || | |||||| ||| | |||| ||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTT 42791 || || ||||||||||| |||||||| || || || ||||| |||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 42792 GGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 || || |||||||| ||||| |||||||||||||| || | ||| | ||||| || || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 42852 CGTATTTGGTGGGTC 42866 ||||| || || || Sbjct 14999 TGTATTCGGCGGCTC 15013 >seq29563 Length=4854 Score = 104 bits (114), Expect = 7e-18 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 42724 CCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAAC 42783 ||| |||| || || ||||||||||| |||||||| || || |||||||| |||||| Sbjct 4286 CCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAAC 4345 Query 42784 TTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGT 42843 || ||| | || || |||| ||| ||||| |||||||||||||| || || ||| | || Sbjct 4346 TTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTATGT 4405 Query 42844 GTTGC 42848 || || Sbjct 4406 GTCGC 4410 >seq6 Length=22682783 Score = 102 bits (112), Expect = 2e-17 Identities = 139/188 (74%), Gaps = 11/188 (6%) Strand=Plus/Minus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGA----TGAT--TCCCTGTCTGCTCG-C 42368 || |||| ||| |||| ||||||| ||| ||| |||| ||||| || | | | Sbjct 2115462 AATCGTCGTTACATTGGATGGTTTGATGTTTTGAATTTTGATGATCCCTACCTTATTGAC 2115403 Query 42369 TGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCA 42427 || || | ||| |||||| |||||||||||||||||||| ||||| |||||||| Sbjct 2115402 CGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCCTTTAGTAGATATTGATGG-- 2115346 Query 42428 TTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCG 42487 ||||||| |||| ||||| ||||| || || || ||||| || || | ||||||| | Sbjct 2115345 TTCGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTA 2115286 Query 42488 TGCCTAGC 42495 | |||||| Sbjct 2115285 TTCCTAGC 2115278 Score = 100 bits (110), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| || ||||||||||||||||| ||||| |||||||| ||||||| Sbjct 2047965 CTGTATTTATTATCACTTTCATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGT 2048022 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496 |||| ||||| ||||| || || || ||||| || || | ||||||| | | |||| Sbjct 2048023 CTGTTTCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTATCCCTACTT 2048082 Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGC 42556 | || || || | || || || | || |||||||| || |||| || | | Sbjct 2048083 CTGCGGCTATCGGTTTGCACTTTTACCCAATATGGGAAGCTGCATCCGTTGATGAGTTGT 2048142 Query 42557 TCTACAATGGCGGACCTTA 42575 | ||||| ||||| ||||| Sbjct 2048143 TATACAACGGCGGTCCTTA 2048161 >seq28688 Length=72243 Score = 100 bits (110), Expect = 8e-17 Identities = 114/148 (77%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 || ||||||||| | || ||| | |||||||||||| |||| ||||||||||| || Sbjct 1959 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 2018 Query 42349 ATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCC 42406 ||||| |||| | | | | || || | ||| |||||| ||||||| |||||||||| Sbjct 2019 ATGAT-CCCTACATTATTGACCGCAACTTC-TGTATTTATTATCGCTTTTATTGCTGCCC 2076 Query 42407 CTCCGGTAGACATTGATGGCATTCGTGA 42434 ||| ||||| |||||| | |||||||| Sbjct 2077 CTCTAGTAGATATTGATTGTATTCGTGA 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143466239444948