Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq28107 125 2e-24 seq6 91.5 4e-14 >seq28107 Length=123132 Score = 125 bits (138), Expect = 2e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 || ||||| || ||||| ||||| ||| | || || ||||| || |||||||| || Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 || || ||||| | ||||||||| |||||||||||||| || |||||||| ||||| | Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 14891 Query 26405 AAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCT 26464 || || || || || | || || | ||||| ||||| | ||| || | | || ||| Sbjct 14890 AAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACCGGAGCT 14831 Query 26465 GTATATGCAACA 26476 | |||||||||| Sbjct 14830 GAATATGCAACA 14819 >seq6 Length=22682783 Score = 91.5 bits (100), Expect = 4e-14 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 26573 TATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAA 26632 || || ||||| ||||||| | |||| || | | |||||||||| || |||||||| Sbjct 2048161 TAAGGACCGCCGTTGTATAACAACTCATCAACGGATGCAGCTTCCCATATTGGGTAAAAG 2048102 Query 26633 TGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTAC 26692 || | ||||| || ||| | |||| | || || | ||||||||||||||||| Sbjct 2048101 TGCAAACCGATAGCCGCAGAAGTAGGGATAATGGCACCAAAAATTATATTGTTTCCGTAA 2048042 Query 26693 ATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATG 26752 | || || || ||||| | |||||| | ||||| |||||||| || || || ||| Sbjct 2048041 AGTAGAGATCCAGAAACAGACTCACGAA--CCATCAATATCTACTAAAGGGGCAGCAATG 2047984 Query 26753 AA 26754 || Sbjct 2047983 AA 2047982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147643501421920