Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq28107 114 2e-20 >seq6 Length=22682783 Score = 120 bits (132), Expect = 4e-22 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| || | ||||||||||| ||| ||||| |||||||| ||||||| | || Sbjct 2047970 TTTATTATCACTTTCATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTT 2048027 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| ||| || | || || ||||| || || | |||||| || |||||| ||| Sbjct 2048028 TCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTATCCCTACTTCTGCG 2048087 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | ||||| || || || |||||||| ||| | ||||||||| ||| ||| Sbjct 2048088 GCTATCGGTTTGCACTTTTACCCAATATGGGAAGCTGCATCCGTTGATGAGTTGTTATAC 2048147 Query 155242 AATGGTGGTCCTT 155254 || || ||||||| Sbjct 2048148 AACGGCGGTCCTT 2048160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||| ||||||||||| ||| ||||| |||||||| ||||||| | || Sbjct 2115389 TTTATTATCGCTTTCATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTT 2115332 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAG----TTC 155177 |||| ||| || | || || ||||| || || | |||||| || | ||||| ||| Sbjct 2115331 TCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTATTCCTAGCTACTTC 2115272 Query 155178 AAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGT 155233 || || ||| | ||||| || || || |||||||| ||| || ||||||||| Sbjct 2115271 TGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCTGTTGATGAGT 2115216 >seq28107 Length=123132 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 155352 TGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGG 155411 ||||||||| || || || || | ||||| | || || ||| | | || || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 155412 TCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTT 155471 ||| || || || |||| |||||||| || |||||||||||||| |||| |||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 155472 CGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGG 155531 || || || || || || ||||| |||||||| || || ||||| | || ||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 155532 TGTGTTCGGTGGATCTCT 155549 ||| ||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584549720007560