Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq28107 107 6e-19 seq28688 84.2 6e-12 seq6 82.4 2e-11 seq29563 80.6 8e-11 >seq28107 Length=123132 Score = 107 bits (118), Expect = 6e-19 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || || || | ||| | || || ||||| ||||| || || || Sbjct 15010 CCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTATGCTCA 14951 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || || || |||| ||| |||||||| || ||| |||||||| |||||||||||| || Sbjct 14950 GCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCTGAA 14891 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || |||||||| | ||| || | ||||| || || | ||| |||| | |||||| Sbjct 14890 AAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACCGGAGCT 14831 Query 41121 GTGTATGCCACA 41132 | ||||| ||| Sbjct 14830 GAATATGCAACA 14819 >seq28688 Length=72243 Score = 84.2 bits (92), Expect = 6e-12 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 41369 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATG 41427 |||||| || | ||| |||||||| | || || || ||||| ||||| || || ||| | Sbjct 2105 CTCACGAATACAATCAATATCTACTAGAGGGGCAGCAATAAAAGCGATAATAAATACA-G 2047 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 || || || | ||||| || ||||| | ||||||||||| || | || || |||| Sbjct 2046 AAGTTGCGGTCAATAATGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGACGGT 1987 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || ||||| || | ||||||||| || Sbjct 1986 TTTCAGTGCTGGTTATCCAGTTACAGAA 1959 >seq6 Length=22682783 Score = 82.4 bits (90), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 41229 TATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAA 41288 || || ||||||||||||| | |||| || | | | |||||||| |||||||| || Sbjct 2048161 TAAGGACCGCCGTTGTATAACAACTCATCAACGGATGCAGCTTCCCATATTGGGTAAAAG 2048102 Query 41289 TGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTAC 41348 || | ||||| || ||| | || | | || ||| | || |||||||| ||||| Sbjct 2048101 TGCAAACCGATAGCCGCAGAAGTAGGGATAATGGCACCAAAAATTATATTGTTTCCGTAA 2048042 Query 41349 ATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTAC 41392 | || || || ||||| | |||||| | ||||| |||||||| Sbjct 2048041 AGTAGAGATCCAGAAACAGACTCACGAA--CCATCAATATCTAC 2048000 >seq29563 Length=4854 Score = 80.6 bits (88), Expect = 8e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || ||||| ||||| ||||| || || || | || || |||| ||| |||||||| Sbjct 4399 CATGTGAAATGGATGCATAAGAATATTATGCTCAACCTGAAATACAATCATAAAGTTGAA 4340 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGG 41080 || || |||||||| |||||||||||| || || |||||||| | ||| Sbjct 4339 AGTACCGGAGATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATTGG 4286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143635760796234