Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq28107 116 4e-21 >seq28107 Length=123132 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 67763 GAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTT 67822 |||||| || ||||||||||| ||||| || | ||| | || || |||||||| || || Sbjct 15017 GAGTGAGCCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATT 14958 Query 67823 GTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGC 67882 ||||| || || || || | ||| |||| ||||||||||| || || |||||||| | Sbjct 14957 ATGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACC 14898 Query 67883 GTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACAC 67942 || || || || ||||| | || |||| |||||| || || | || || | || Sbjct 14897 ATCTGAAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAAC 14838 Query 67943 TGGAGCAGAGTATGCTACA 67961 ||||| || ||||| ||| Sbjct 14837 CGGAGCTGAATATGCAACA 14819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566670451811160