Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq28107 109 6e-19 seq6 89.7 6e-13 seq3 89.7 6e-13 >seq28107 Length=123132 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 68245 AGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTG 68304 || || || || ||||| ||||| || || | ||| | || || ||||| || || || Sbjct 15016 AGTGAGCCGCCGAATACACCAGCTACACCTAACATGTAAAACGGATGCATAAGAATATTA 14957 Query 68305 TGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCG 68364 ||||| || || || || | ||| |||||||||||||||| || || |||||||| | Sbjct 14956 TGCTCAGCCTGAAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCA 14897 Query 68365 TCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACA 68424 || || || || ||||| | || |||| || ||| ||||| || |||||||| Sbjct 14896 TCTGAAAAGCTTCCCTGACCTATTGGGTAGATCAAGAAAACTGCAATAGCAGCTGCAACC 14837 Query 68425 GGTGCAGAGTATGCAACA 68442 || || || ||||||||| Sbjct 14836 GGAGCTGAATATGCAACA 14819 >seq6 Length=22682783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/223 (71%), Gaps = 13/223 (6%) Strand=Plus/Plus Query 68547 ACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACC 68606 ||| ||||| ||||||||||||| | | |||||||| | | |||||||| ||| Sbjct 2026897 ACCGTTGTATAACCACTCATCAACG----CAGCTTCCCATACCAGGTAAAAGTGTGAACC 2026952 Query 68607 AATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGA 68666 || || ||| |||||| || ||||||||||| || ||||| || || || || Sbjct 2026953 GATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATTATATTGTTTTGGTAAAGTAGAGA 2027012 Query 68667 ACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGAC 68726 ||| ||||| |||||| |||||| || || |||| ||||| ||||| || | Sbjct 2027013 TTCAGAAACAGACTCACGA--ACCATCAATATCTGAAGGG---GCAGCAATGAAAGCAAT 2027067 Query 68727 GATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCA 68767 || || ||| | ||||| | ||| || ||||||||||||| Sbjct 2027068 AATAAATACA-AAAGTTGCGGTCAATAAG-GTAGGGATCATCA 2027108 >seq3 Length=31061273 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 66680 ATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGAT 66739 ||| || | ||| || || |||||||| ||||| || || || ||||| |||| | ||| Sbjct 10151857 ATTTAAGATAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGTGCGGAT 10151916 Query 66740 CTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAA 66786 ||||| || ||||||||||| ||||| ||||| || || ||||||| Sbjct 10151917 TTCTTGAGAAACAAAGTCATAGGCACGTAGGTTCAGGGCCAGACCAA 10151963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571775158795320