Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq28674 145 1e-29 seq28626 145 1e-29 seq4 100 5e-16 seq3 98.7 2e-15 seq1 93.3 8e-14 >seq28674 Length=75340 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || | ||| |||| ||| | |||| |||||| |||||||| || Sbjct 21045 ATTCCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCA 20986 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||||| ||| || ||||| ||||| ||||| || |||| |||||||||||| Sbjct 20985 GCAAGAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGA 20926 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | || | || || || || ||||| || Sbjct 20925 GGAATTCCTTCTTTATCTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCG 20866 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || ||||| ||||| || || |||||||| Sbjct 20865 ACTTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 Score = 113 bits (124), Expect = 8e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || || | | |||||| || || || |||||||| ||| Sbjct 20746 TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTA 20687 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||| | || || || ||||| || ||||| ||||| ||||| Sbjct 20686 TCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATG 20627 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||| || || || ||||| Sbjct 20626 GTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 20592 >seq28626 Length=87040 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| | ||| |||| ||| | |||| |||||| |||||||| || Sbjct 42362 ATTCCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCC 42421 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || ||||| || || ||||| || |||| ||| ||||||||| Sbjct 42422 GCAAGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGA 42481 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| ||||||| ||| | || || |||||||| || || Sbjct 42482 GGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCT 42541 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 42542 ACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || || || | ||||| ||||| ||||||||| || | | |||| ||| Sbjct 42152 AGAACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTTCATCCATCC 42211 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||||| |||||||| || |||| |||||||||||| || || || || ||||| Sbjct 42212 TCAAGCTGTTTACCGGCAAAGATCAATCGCTGTTGATCAGGTGGAATCCCCTCCTTATCC 42271 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| || | ||| ||||||||| ||| ||| || || ||||| || || Sbjct 42272 TGAATCTTGGCCTTCACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTAATCGTC 42331 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || | ||| || ||||| || |||||| Sbjct 42332 TTCCCCGTCAACGTCTTCACAAAAATCTGCATT 42364 >seq4 Length=28907061 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | || || || | || | |||||| || ||||| || Sbjct 27565684 ATACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCA 27565625 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | || |||||||||||||| || ||||| ||||| || Sbjct 27565624 GCCAGGGTTCTGCCATCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGG 27565565 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||||||||| |||| || | ||| || || || ||| ||| Sbjct 27565564 GGAATACCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 27565505 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || ||||| || ||||| Sbjct 27565504 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 27565455 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| |||||||| || || || || || || || ||||| ||||| ||||| || Sbjct 27565372 TGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATC 27565313 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| ||||| || ||| || || || || || || || || Sbjct 27565312 TTGGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCG 27565253 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||||||||| Sbjct 27565252 GTGAGGGTCTTAACAAATATTTGCAT 27565227 >seq3 Length=31061273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || |||||||| || || | | || || ||||| || |||||||| || Sbjct 8017598 ATCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTT 8017539 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| ||| | || || || || ||||||||||| || || ||||| Sbjct 8017538 GTCTTGGATCTTGGCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTAT 8017479 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| ||||| || || || ||||| || Sbjct 8017478 CGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCTT 8017440 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || ||||| ||||| || ||||| | || | || || || || Sbjct 12366867 ATTTGCATGCCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTG 12366808 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || |||| ||| || | || |||||||||||||| || || || || Sbjct 12366807 TAATCGGCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGG 12366748 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || |||||||| |||| || | ||| ||| || || || Sbjct 12366747 TCTGGAGGAATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCTGAG 12366688 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || | ||| || || || ||||| ||||| || ||||| || ||||| Sbjct 12366687 CTTTCTACCTCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366632 >seq1 Length=28142018 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| || || || || |||||||| || ||||| || Sbjct 1586786 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATC 1586845 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || || ||||| || ||||| ||||| || || Sbjct 1586846 TTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGAGTAATAGTCTTTCCG 1586905 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 1586906 GTAAGGGTCTTCACAAAGATTTGCAT 1586931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899215244950320