Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 136 7e-27 seq28626 134 2e-26 seq28226 129 1e-24 seq28674 125 1e-23 seq4 116 7e-21 seq9364 109 1e-18 seq28803 100 5e-16 seq3 95.1 2e-14 seq1 86.0 1e-11 >seq2 Length=32560536 Score = 136 bits (150), Expect = 7e-27 Identities = 350/525 (67%), Gaps = 20/525 (4%) Strand=Plus/Minus Query 38853 ttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTT 38912 || || |||||||| ||||| || | | || || || | ||| ||||||| ||||| Sbjct 19587668 TTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAATTCCATCCAATCAAAAGGATTC 19587609 Query 38913 TTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATAATCTATCGGCCACAAATTC 38971 | ||||||| ||||| | | | ||| || ||||| ||||| || ||||| || Sbjct 19587608 TGAACATTATAA-ATTTTCCCACAACCAAGCTCACCCAATAACCTATCAGCAACAAACTC 19587550 Query 38972 AACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCATC 39031 || ||| || ||| ||||||| ||||| || | || | | || | || ||| Sbjct 19587549 AATATACTGACTCATCAATTCACCGTTCATTCCAACCAAAGCACAAGGAAGCGCTTCACA 19587490 Query 39032 AATAAATTCtttttctatttctacagcttgtttaattatcataattatattatttt-ttg 39090 || ||||||| | || || || || || | | | ||| || | | | || Sbjct 19587489 AACAAATTCTCTCTCAATCTCAACCGCATC---ACGGACAATAGTTTTCACACGCTCTTC 19587433 Query 39091 a-taa-tttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACC 39148 | ||| ||| | | | | | | || ||| |||||||| || ||||| ||| | ||| Sbjct 19587432 ACTAAGTTTCTTTCTCAAAAG---CGAATAAAGTAAACAAGCGAAATCACAATGAAGACC 19587376 Query 39149 TTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTT 39208 |||||| | || |||| || || ||||||||| || |||||||| || | ||||| Sbjct 19587375 TTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTT 19587316 Query 39209 AAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGC 39268 |||||| || |||| |||||| | |||||| |||||||| || ||||| ||||| || Sbjct 19587315 AAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTCAACACAAGCAAAAGC 19587256 Query 39269 TATTATTCTTGCTCCAAACATTAATTTATCATCTAAA---ATCCAATTTATGGCCCAATC 39325 | |||||| | || ||| |||| | || ||||| || || |||||||| Sbjct 19587255 AACGATTCTTTCAGCA------AATGAATCAGATGAATCGATCCATTTCATAGCCCAATC 19587202 Query 39326 TGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 ||||| || |||| | || || | || || || | ||| || Sbjct 19587201 AGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAA 19587157 >seq28626 Length=87040 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||||| |||| |||||| ||||||||||| | | || | | || ||| Sbjct 42383 ACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTCCTCCCATCTTCC 42442 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| || || ||||| || |||| ||| || ||||| || |||||||| || ||||| Sbjct 42443 AATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGG 42502 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| || || || ||||| || |||||||| ||||| || |||||||| Sbjct 42503 ATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACCTCTAGGGTTATGGTTTTG 42562 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||| | ||| |||||||| Sbjct 42563 CCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 Score = 105 bits (116), Expect = 1e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||||| |||||||||||| | | || || | | || || | |||||||| Sbjct 42167 GTAGATTCTTTCTGAATATTATAATCAGCAAGAGTTCATCCATCCTCAAGCTGTTTACCG 42226 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || |||| |||||| |||||||| || || || ||||| || || || || Sbjct 42227 GCAAAGATCAATCGCTGTTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTTGGCCTTC 42286 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| |||||||| || || || || |||||||| || || || || || || Sbjct 42287 ACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTAATCGTCTTCCCCGTCAACGTC 42346 Query 172053 TTAATGAATATCTGCATT 172070 || | || ||||||||| Sbjct 42347 TTCACAAAAATCTGCATT 42364 >seq28226 Length=90112 Score = 129 bits (142), Expect = 1e-24 Identities = 371/565 (66%), Gaps = 22/565 (4%) Strand=Plus/Minus Query 38814 CTATTCATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTT 38873 |||||||| ||| ||| || ||||| ||| || || |||||||| ||||| Sbjct 35103 CTATTCATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTC 35044 Query 38874 CCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCT 38933 || | | || || |||| ||| ||||||| ||||| | ||||||| |||||| Sbjct 35043 CCCTGAAGCGAAATCAAATCCATCCAATCAAAAGGATTCTGAACATTATAAA--TTTTCT 34986 Query 38934 C-CTATCAATA-CATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATT 38991 | | | ||| || | || || ||||| || ||||| |||| ||| || ||| || | Sbjct 34985 CACAACCAAGCTCACACAACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAAT 34926 Query 38992 CACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctattt 39051 ||| |||||| || | || | || | || || || |||||| | || || | Sbjct 34925 CACCATTCATTCCAACCAAAGCGCAAGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCT 34866 Query 39052 ctacagctt---gtttaattatcataattatattattttttgataatttatatttaatat 39108 | || || | | |||| || | | | | || | ||||| | | | Sbjct 34865 CAACCGCGTCACGCACAATTGTCTTCAC---ACGCTCTTCACTCAGTTTATTCCTCAAAA 34809 Query 39109 gattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATT 39168 | || ||| | ||||| |||||||| ||| | |||||||| | || |||| | Sbjct 34808 G---CGAATAAATCAAACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCT 34752 Query 39169 CATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA 39228 |||| ||||||||| || |||||||| || | |||||||||||||| |||| | Sbjct 34751 CATTTGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGA 34692 Query 39229 AACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACA 39288 |||| | ||| || |||||||| || ||||| ||||| || | || ||| | || Sbjct 34691 AACTTCCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCA---- 34636 Query 39289 TTAATTTATCATCTAAA---ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAG 39345 ||| |||| | || ||||| || || |||||||| ||||| ||| | ||| ||| Sbjct 34635 --AATGAATCAGATGAATCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAG 34578 Query 39346 GTATATTTTCTATAGCTTTAAATAA 39370 | ||| | || || || | ||| || Sbjct 34577 GAATAGTCTCAATCGCGTGAAACAA 34553 >seq28674 Length=75340 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | |||| |||||| ||||||||||| | | || || | || ||| Sbjct 21024 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCAAGAGTTCTACCATCTTCC 20965 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| || || ||||| || |||| ||||| ||||| || ||||||||||||||||| Sbjct 20964 AATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 20905 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || || || || || ||||| ||||| || || |||||||| Sbjct 20904 ATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACTTCGAGTGTGATGGTTTTG 20845 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| | ||| || ||||| Sbjct 20844 CCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 Score = 96.9 bits (106), Expect = 6e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||||| |||||||||||| | | || | | | || || | ||||||||| Sbjct 21240 GTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCTTCAAGCTGTTTACCA 21181 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || |||| ||| || |||||||| || || || ||||| || || || || Sbjct 21180 GCAAAGATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTTCGCCTTC 21121 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| |||||||| || || || || | |||||| || || || || || || Sbjct 21120 ACATTATCAATAGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTTCCCGTCAACGTC 21061 Query 172053 TTAATGAATATCTGCATT 172070 || | || ||||||||| Sbjct 21060 TTCACAAAAATCTGCATT 21043 >seq4 Length=28907061 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || || || | || | ||||| ||| || ||| || || || | Sbjct 27566137 CCACCACGAAGGCGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC- 27566079 Query 171903 AAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || ||| || |||||||| || |||||||| || || ||||| || || ||||| Sbjct 27566078 AAGGGTCCTTCCATCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 27566019 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| || || ||||||||||| || |||||| || |||||||| |||||| Sbjct 27566018 GATTCCCTCCTTGTCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTAC 27565959 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||||| || ||||| || || || | || |||||||| Sbjct 27565958 CTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 Score = 107 bits (118), Expect = 3e-18 Identities = 168/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 27565228 ATACCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCG 27565169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| |||| || || ||||||||||| | | ||| ||||| ||| Sbjct 27565168 GCAAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGT 27565109 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||| |||||||| || Sbjct 27565108 GGGATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCA 27565049 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTAT 172077 ||||| ||||| ||||| || ||||| | || |||| ||| || ||||| | |||||| Sbjct 27565048 ACTTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCATCTATATTAT 27564990 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | ||| | |||||| || |||||||| Sbjct 27565684 ATACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCA 27565625 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | || || || |||||||| || ||||| || || || Sbjct 27565624 GCCAGGGTTCTGCCATCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGG 27565565 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||||||| || || ||||| ||| || || || || Sbjct 27565564 GGAATACCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 27565505 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || |||| || |||||||| Sbjct 27565504 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 27565455 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | || | ||| | ||||| || || ||||| Sbjct 27565456 ATACCACCACGAAGTCGCAAGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 27565397 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | || | || || | || || ||||||||||| || || || ||||| ||| Sbjct 27565396 GCTAAGGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGT 27565337 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || || || ||||| || ||||| || || Sbjct 27565336 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAGCTCTCC 27565277 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || || | || |||| ||||| ||||| Sbjct 27565276 ACCTCAAGGGTGATTGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 27565227 >seq9364 Length=1264 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | || | ||| || || || ||||| Sbjct 509 ATACCACCACGGAGACGGAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCG 568 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| |||| ||||| ||||||||||| || | ||| ||||| ||| Sbjct 569 GCAAGGGTCCGCCCGTCCTCCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGT 628 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| || ||||| ||| ||||| || || Sbjct 629 GGGATCCCTTCCTTATCTTGAATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCA 688 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| |||||||| | || || | || || ||||| Sbjct 689 ACTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| | ||| | ||||| || || ||||| Sbjct 281 ATACCACCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 340 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | | | || || | || || ||||||||||| || || || ||||| ||| Sbjct 341 GCTAAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGT 400 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || || || ||||| ||| || || || || Sbjct 401 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 460 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || || | || || ||||| Sbjct 461 ACCTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 510 >seq28803 Length=52646 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | || | ||| || || || ||||| Sbjct 33766 ATACCACCACGGAGACGGAGCACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCG 33825 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| |||| || || ||||||||||| | | ||| ||||| ||| Sbjct 33826 GCAAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGT 33885 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||| |||||||| || Sbjct 33886 GGGATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCA 33945 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || ||||| | || |||| ||| || ||||| Sbjct 33946 ACTTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | |||||| || || | ||| | ||| | ||||| || || ||||| Sbjct 33538 ATACCTCCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 33597 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | | | || || | || || ||||||||||| || || || ||||| ||| Sbjct 33598 GCTAAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGT 33657 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || || || ||||| ||| || || || || Sbjct 33658 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 33717 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | || |||| || |||||||| Sbjct 33718 ACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCAT 33767 >seq3 Length=31061273 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | ||| | |||||| || ||||| || Sbjct 12367089 ATACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCA 12367030 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || || ||||||||||| | ||||| ||||| || Sbjct 12367029 GCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGA 12366970 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| |||||||| ||| || ||||| || || ||||| ||| Sbjct 12366969 GGGATACCCTCTTTGTCTTGTATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCT 12366910 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||| || || || ||||| || | || || ||||| Sbjct 12366909 ACCTCCAAAGTAATGGTCTTGCCTGTCAATGTCTTTACAAAGATTTGCAT 12366860 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| | || | || || || || ||||| Sbjct 12366633 ATACCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCG 12366574 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || |||| || || ||||||||||| | || || ||||| || Sbjct 12366573 GCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGG 12366514 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || ||||| ||||||||||| || Sbjct 12366513 GGAATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCA 12366454 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| ||||| || || | || |||| || |||||||| Sbjct 12366453 ACCTCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 >seq1 Length=28142018 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | || | || | || | ||| | ||| || ||||| ||||| Sbjct 1586408 ATACCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCC 1586467 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| || ||||||||||| || ||||| || || ||||| || || || Sbjct 1586468 GC-AAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGG 1586526 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| ||||| || || ||| || ||||| || || ||||| || Sbjct 1586527 GGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTC 1586586 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| ||||| || || || || | ||||||||||| Sbjct 1586587 CACCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCAT 1586637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904694169175800