Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 197 4e-45 seq28226 192 2e-43 seq7 138 3e-27 seq3 138 3e-27 seq2 123 7e-23 seq38667 122 3e-22 seq38492 89.7 2e-12 seq1 84.2 6e-11 >seq6 Length=22682783 Score = 197 bits (218), Expect = 4e-45 Identities = 352/506 (70%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||||||||| |||| | | ||||| | || | || || | ||| || || || Sbjct 20869440 CTATCAAACCTTCCAGGTCTAAGCAATGCAGAATCAAGAATTTCAGGTCTATTAGTAGCA 20869499 Query 288910 GCCAATACAACAATAGATTCGGT-TTGCT--TAAATCCATCCATACTTGTTAAAATTTGA 288966 || |||| |||||| | || || | |||| |||||||| || || | ||| Sbjct 20869500 GC-AATA--ACAATAACACCAGTATTACCACTAAAACCATCCATTTCAGTCAACAACTGA 20869556 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || | ||||||||| ||||||||||| || | ||| ||| | | | ||| | || Sbjct 20869557 TTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC--AAT-ACCTGTACCTCTCTGTCTT 20869613 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 |||||||||||||| || ||||| || |||| ||| || ||||||| | | || | Sbjct 20869614 ---CCAACAGCATCAATCTCATCAATAAATATCAAACAAGGTGAATTTTCTTTGGCCTTG 20869670 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || |||||||| | || || |||| ||||||| |||| || | ||||| ||| Sbjct 20869671 TTAAACAAATCTCTTACTCTTGAAGCACCAACACCAACAAACATCTCAATGAATTCTGAA 20869730 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | || ||||| || |||||||| ||||| | ||| | || || |||||| Sbjct 20869731 CCTGATAGTGAAAAGAATGGAACTTTTGCTTCTCCTGCAATTGCTTTTGCTAGTAGTGTC 20869790 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || ||||| || ||||| || |||| |||||||| ||||| | ||| || || || Sbjct 20869791 TTTCCTGTCCCTGGTGGACCTACTAAAAGAACTCCTTTTGGAATTTTCGCTCCGAGTGAT 20869850 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||||||||||| | | ||| || || || || || | | || | ||||| ||| Sbjct 20869851 GAAAATTTCTCAGGGGTTTGTAAGAACTCAACTATCTCTTGGAAATCTTGCTTTGCTTCA 20869910 Query 289327 TCACATCCTGCTACATCAGCAAAAGT 289352 || ||| |||||||| |||| || Sbjct 20869911 TCTACTCCAGCTACATCCTCAAATGT 20869936 >seq28226 Length=90112 Score = 192 bits (212), Expect = 2e-43 Identities = 449/664 (68%), Gaps = 19/664 (3%) Strand=Plus/Plus Query 133235 TTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAA 133294 || |||||||| || || ||||| | || ||| | | | | | || ||| |||| Sbjct 34373 TTCTTTGCTGCTTCCGACGGCATTGTCTTGGAGAATCTTGCAGGAAGATTCATGAAAGAA 34432 Query 133295 GTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCAT 133354 |||||| | | || || ||||| || || || | ||||||||||| || ||||| ||| Sbjct 34433 GTTCAAGTATCAGAGGCGCGTGCTTTCTACGGATTCCAGATTGCGATCGAGAATATTCAT 34492 Query 133355 TCTATCACATATTCTACTCTA-ATTGATACTTACATCAAAGATACCGTCCAGAAGCACAA 133413 ||| | ||| | |||| ||||| ||||| ||| | ||| | || ||||| | Sbjct 34493 TCTGAGATGTATAGT-CTCTTGATTGAAACTTATATCCATGATTCTGTTGAGAAGAATCG 34551 Query 133414 ACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTA 133472 | || |||| ||| | || | |||||||||||| ||||||| |||| |||||||| | Sbjct 34552 TTTGTTTCACGCGATT-GAGACTATTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGA 34610 Query 133473 AATGGATCCAGGACAAGCGTGCGAGT--TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||| | | | || | |||||| | |||||||||||||| || Sbjct 34611 AATGGATC-----GATTCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGT 34665 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 || || || |||||| ||| ||||| | ||||||||||||||||| |||||| | Sbjct 34666 TGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTTTGGCTTAAAAAACGTGGTTT 34725 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | ||||| | |||||| || || ||||||||| | ||||| | |||||| ||| Sbjct 34726 AATGCCTGGTTTAACTTTTTCAAATGAGCTTATTTCACGCGACGAAGGACTTCATTGCGA 34785 Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATA-AGATTGAAG 133709 |||||| ||| || | || || ||| || | | | ||| | | ||||| Sbjct 34786 TTTTGCCTGTTTGATTTATTC-GCTTTTGAG-GAATAAACTGAGTGAAGAGCGTGTGAAG 34843 Query 133710 A-AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGC 133768 | |||| | | || |||||||| |||||| |||||| | || || || ||| Sbjct 34844 ACAATTGTGCGTGACGCGGTTGAGATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCTTGC 34903 Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828 ||| |||| ||||||| || ||||| | |||||||| ||||| ||||| || Sbjct 34904 GCTTTGGTTGGAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGG 34963 Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATT--TACGGTTCCGCCAATCCATTCGACTGGA 133886 ||| | || | ||| | || || ||| || |||| | ||||| || || |||| Sbjct 34964 TTGTTGTGTGAGCTTGGTTGTGAGAAAATTTATAATGTTCAG--AATCCTTTTGATTGGA 35021 Query 133887 TGGA 133890 |||| Sbjct 35022 TGGA 35025 >seq7 Length=30551617 Score = 138 bits (152), Expect = 3e-27 Identities = 346/517 (67%), Gaps = 28/517 (5%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 |||||||||||| |||| | | ||||| | || | | ||| | ||| || || || Sbjct 4917428 CCTATCAAACCTTCCAGGTCTAAGCAATGCAGAATCAAGAACATCAGGTCTATTAGTAGC 4917369 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGA 288966 ||||| |||| || | || || | ||| |||||||| || |||| ||| Sbjct 4917368 AGCCAAAACAATAACACC--CGAATTACCAGAAAAACCATCCATCTCAGTCAAAAGCTGA 4917311 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCttt 289024 |||| ||||||||||| |||||||| ||| | | | || |||||| | Sbjct 4917310 TTAATAGTTTGTTCCCTCTCATCATTCCCACCAC----------CAAGTCCAGCTCCTCT 4917261 Query 289025 ttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | | ||||| ||||||||||| ||||| || | | || || | || |||| Sbjct 4917260 CTGTCTCCCAACTGCATCAATTTCATCAATAAACACAATGCAAGGCGCCTTCGACTTCGC 4917201 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | |||| || || || || | || || |||| ||||||| ||| ||| ||||| || Sbjct 4917200 CTTCTCAAACAAATCCCTAACCCTAGAAGCACCAACACCAACAAACAATTCCACAAACTC 4917141 Query 289143 AGAAGCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||||| | || ||| ||| | ||| ||||| || ||||| |||||||||| | Sbjct 4917140 CGAAGCCGC-ACACGAAAAGAACGGCACACCAGCTTCACCGGCTACCGCCCTCGCCAATA 4917082 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT-GCCCC- 289259 | ||||| |||||||| ||||| || | || ||| | |||||| | | | || || || Sbjct 4917081 GCGTCTTTCCTGTTCCCGGTGGCCCAACCAAAAGA-CACCCTTTAGGAATCTTAGCACCT 4917023 Query 289260 --AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||||| | || || ||||| |||| || || || |||| ||| | | |||| Sbjct 4917022 AAAGCAG---TGTACTTATCAGGATTCTTCAAGAAATCAACAACTTCTTGTAATTCAAGC 4916966 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 || || | |||| || || || ||||||||||||| Sbjct 4916965 TTAGCTTGATCAGCACCAGCCACGTCAGCAAAAGTAA 4916929 >seq3 Length=31061273 Score = 138 bits (152), Expect = 3e-27 Identities = 326/484 (67%), Gaps = 14/484 (3%) Strand=Plus/Minus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 |||||| | || | || ||||||||||| |||||||| | ||||||| |||| Sbjct 6381427 TAATGCAGAATCAAGAATGTCGGCTCTGTTAGTTGCTGCAA---CAACAATGACACCGGT 6381371 Query 288933 TTG---CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATC 288989 | || |||||||||||| ||| |||| ||| || || || ||||| ||||| || Sbjct 6381370 ATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCGTC 6381311 Query 288990 ATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTC 289049 ||| || | || || | | || ||| || | || ||||||||||||||||| || Sbjct 6381310 ATTCCCTCCACC-GATTC--CTG--TCCCTCTTTGTCTT-CCAACAGCATCAATTTCATC 6381257 Query 289050 AATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGA 289109 || || | | || |||| ||| | | | || | || || || | ||||| || Sbjct 6381256 AACAAAGACAATGCAAGGAGCATTCTCTTTAGCCTTCTTGAACAAATCACGGACACGAGA 6381197 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168 || |||| ||||||| |||| || ||||| |||||| | |||| | || | |||| | Sbjct 6381196 AGCACCAATACCAACAAACATCTCAACAAACTCAGAACCTGATA-TAGAGAAAAATGGAA 6381138 Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228 || ||||| || || | ||| | || | | |||||| || ||||| || || || Sbjct 6381137 CACCGGCTTCACCGGCAATAGCCTTGGCTAACAATGTCTTTCCAGTTCCTGGAGGACCAA 6381078 Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTA 289288 | | |||||||| || |||| || ||| | || | || ||||||| |||| | Sbjct 6381077 CAAGAAGAACTCCTTTCGGTATGCGAGCACCAACGGAAGTGAATCTCTCAGGCTTCTTGA 6381018 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 |||||| || | ||| || || | || || ||||| || || |||||| ||| Sbjct 6381017 GAAATTCAACCACCTCCATAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATCATCAA 6380958 Query 289349 AAGT 289352 | || Sbjct 6380957 ATGT 6380954 Score = 118 bits (130), Expect = 3e-21 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 156050 ACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| ||||||||||| || |||||| ||||| || ||||| | |||||| |||| | Sbjct 3456884 ACCTTTCCTCTTGCCTCCTCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAA 3456825 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 ||| |||| ||||||||| ||||| ||||| ||||||||||| | ||| | | || Sbjct 3456824 CATTGGAACAATACCATTAGAAGTCCCATTTGTTCCGCGAATGTAACTGCCATAGGCACG 3456765 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 | ||||||| | | ||||| || |||| ||||| ||| ||| || ||||| Sbjct 3456764 TATGTTATGAACAGAAACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTT 3456705 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | |||| | |||| || |||||| ||| |||| ||| Sbjct 3456704 CAATGTATCGTAAATCCCCTCAATACTATCCTCTTTCAT 3456666 Score = 104 bits (114), Expect = 7e-17 Identities = 312/470 (66%), Gaps = 19/470 (4%) Strand=Plus/Minus Query 288882 GTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT--TTGCTTA 288939 |||||||||||| ||||| ||||| |||| | ||||||| | || || | | Sbjct 23404949 GTCTAATATATCAGCTCTATTTGTACCTGCTAGCACAACAACTCCAGCAGTAGTTCC--A 23404892 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | |||||| | || ||| | |||||||||||||| Sbjct 23404891 AAACCATCCATCTCCACCAACAATTGATTTAAAGTACTTTCACGCTCATCATTTGAACCA 23404832 Query 289000 CTTGAATCACC-CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | || ||| | |||||| ||||| |||||||| || ||||| || | Sbjct 23404831 GAGAAACCTCCACGA----CCCCTTTTCCGACCAATTGCATCAATCTCATCAATAAATAC 23404776 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCCA 289116 | || |||| || || || || | ||| || | ||| || | ||| | |||| Sbjct 23404775 TATACTGGGAGCGCACTGCCTAGC--TTCCTGAAACAAGTTTCTCACCCTGGACGGTCCA 23404718 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAA-TGTTACATTTGC 289175 | ||| ||| ||||||| | || |||||| | |||| | ||| ||| || ||| | Sbjct 23404717 ACACCGACAAACATTTCCATGAAATCAGAACCAGATA-TAGAAAGAAATGGCACACCAGA 23404659 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || ||||| ||| | || | ||| || || ||||| || || || ||| | | || Sbjct 23404658 CTCCCCTGCAGTTGCTTTTGCTAAAAGGGTTTTTCCTGTGCCTGGGGGACCCACCAGAAG 23404599 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGA-CTT-ATATTTCTCAGGGCTCTTTAAAAAT 289293 | | || || || | ||| || ||| || ||| ||| |||| ||| |||| | || Sbjct 23404598 AGCACCTTTAGGAATTTTGGCACCA--AGCTCTTCATACTTCTTAGGATTCTTGAGGAAG 23404541 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| ||| || ||||| ||||||||||||||| || || || || Sbjct 23404540 TGCACAAACTCCATAATTTCATTTTTTGCCTCATCACAACCAGCAACGTC 23404491 >seq2 Length=32560536 Score = 123 bits (136), Expect = 7e-23 Identities = 225/326 (69%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| ||||| |||||| ||| | | || | |||||| || || || Sbjct 12863736 ATCATATTTAACCATGATGTCCTCCATAGCCTTTACAAGCCGCCTCTGAATGTACCCGGT 12863677 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || || || || |||||||| ||||| | | |||||||||||||||||| || Sbjct 12863676 TTCTGAGGTCTTCACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAA 12863617 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||||| || || || | | | | ||| |||| || || ||||| ||| || Sbjct 12863616 AAACTCTTGAGGGGTCAGTCCACGGAGATATGAGTTCTCCACAAACCCACGACTCTCAGG 12863557 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT--AGCCGTATGGGATA 302790 | || || || |||||||| |||| |||| | ||| || | || |||| || Sbjct 12863556 CCCATAATCATCTTTTGTAAAGTGGGGCAATGTCC-GATCT-ATGAACCCAAATGGAATT 12863499 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCA 302850 || || || ||||| ||||| || |||| || | | ||||||| || || || | | Sbjct 12863498 CGTTTACCCTCAACATTCTGTTGGCCCACACAAGCAGTCATCTGAGATATGTTAATGAAA 12863439 Query 302851 CTGCCCTTGGAGCCAGCATTTACCAT 302876 || |||||||| ||||| | ||||| Sbjct 12863438 CTTCCCTTGGAACCAGCTGTGACCAT 12863413 >seq38667 Length=153359 Score = 122 bits (134), Expect = 3e-22 Identities = 338/511 (66%), Gaps = 22/511 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||||| || | | ||| || | ||| | || ||||| ||||| |||||| Sbjct 119026 CTATCAAACCGCCCCGGTCTCAATAAAGCAGAGTCAAGAATGTCGGCCCTGTTGGTTGCT 118967 Query 288910 GCCAATACAACAATAGATTCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||| ||||| |||| | || |||||||||||| ||| |||| ||| Sbjct 118966 GC-AATG--ACAATGACCCCGGTATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTGG 118910 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC----CGAATCGCTCCt 289022 ||||| || |||||||||||||| || |||| |||| | | | ||| | Sbjct 118909 TTAAGGGTCTGTTCCCTTTCATCGTTC---CCTC------CACCAATTCCAGTGCCTCGT 118859 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | || ||| ||||||||||||| |||| |||| | ||| |||| ||| | | | || Sbjct 118858 TGCCTTCCCA-CAGCATCAATTTCATCAACAAAAACAATACAAGGAGCATTCTCTTTGGC 118800 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | ||||| || | || || || || |||| ||| ||| |||| || ||||| || Sbjct 118799 CTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGACAAACATCTCAACAAACTC 118740 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 |||| | || | |||| | || | ||| |||||| || || | ||| | || | | Sbjct 118739 AGAACCTGAGA-TTGAGAAAAACGGGACACCTGCTTCACCCGCAATAGCCTTGGCTAATA 118681 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 | |||||||| || || || || || | | |||||||| ||||||| ||||| Sbjct 118680 GCGTCTTACCAGTCCCTGGGGGACCAACAAGAAGAACTCCTTTTGGTATGCGAGCCCCGA 118621 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 || | | ||||||| | || | ||| || || | ||| || || | ||| | Sbjct 118620 TAGTAGTGAACCTCTCAGGCTTTTTCAGAAACTCGACTACCTCCATAAAATCCTGTTTGG 118561 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| || || |||||| |||| || Sbjct 118560 CTTCATCTACCCCAGCAACATCATCAAATGT 118530 Score = 114 bits (126), Expect = 4e-20 Identities = 274/405 (68%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||||| || | | ||| || | ||| | || || || || || |||||| Sbjct 113511 CTATCAAACCGCCCCGGTCTCAATAAAGCAGAGTCAAGAATGTCAGCCCTATTGGTTGCT 113452 Query 288910 GCCAATACAACAATAGAT-TCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTG 288965 || ||| ||||| ||| ||||| | || |||||||||||| ||| |||| ||| Sbjct 113451 GC-AATG--ACAAT-GATCTCGGTATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTG 113396 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 || || || ||||||||||||||||| ||||| | | | | | ||| || | Sbjct 113395 GTTGAGGGTCTGTTCCCTTTCATCATT-----CTCTTCACCAATTCCAGTGCCTCGTTGT 113341 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 | ||| ||||||||||||| |||| |||| | ||| |||| |||| | | || | Sbjct 113340 CCTCCCA-CAGCATCAATTTCATCAACAAAAACAATACAAGGAGCGTTTTCTTTGGCCTT 113282 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||| || | || || || || |||| ||||||| |||| || ||||| ||||| Sbjct 113281 CTTGAATATATCACGAACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGA 113222 Query 289146 AGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || | |||| | || | ||| |||||| || || | ||| | || | || | Sbjct 113221 ACCTGAGA-TTGAGAAAAACGGGACACCTGCTTCACCCGCAATAGCCTTGGCTAATAGCG 113163 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTA 289249 ||||||| || || || || || | ||||| | ||||||| Sbjct 113162 TCTTACCAGTCCCCGGGGGACCAAAGAGAAGAACCCATTTTGGTA 113118 >seq38492 Length=248612 Score = 89.7 bits (98), Expect = 2e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 |||| ||||||||||| ||| | || |||||| | || | || ||||| ||| Sbjct 135234 CCAACACCAACATACAGTTCCAAGAAATCAGAACCAGACAAAGAAAGGAATGGCACACCA 135293 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 || || ||||| |||| | || | ||| || || ||||| || || || || | | Sbjct 135294 GCCTCCCCTGCAGCTGCTTTTGCTAAAAGGGTTTTTCCTGTGCCTGGAGGACCAACCAGA 135353 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAA 289292 ||| | || ||||| | ||| || ||| | ||| ||||||| ||| |||| | ||| Sbjct 135354 AGAGCACCTTTTGGAATTTTGGCACCA-AGGTCTTGGTATTTCTTAGGATTCTTGAGAAA 135412 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| ||| | ||||| ||||||||||||||| || || ||||| Sbjct 135413 ATGCACAAACTCCATGATTTCATGTTTTGCCTCATCACAGCCAGCAACATC 135463 >seq1 Length=28142018 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGAT 251484 ||||||||||| || || |||||| | ||| | | || |||| |||| ||| Sbjct 26041552 CACACATGGACCCTATATGCATCACTTTGATCAAACAACCTTTCCTTAAGGAAGTGAGCG 26041611 Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || | |||||| |||||||| ||||| || || || |||||||| ||||| || Sbjct 26041612 GCTCCATGGGCAATCATGCAATCACGTTCCATCTCTCCAAATCGAAGACCTCCATCACGT 26041671 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC 251588 | || ||||| ||||| || | || ||| | || |||||| Sbjct 26041672 GACCGCCCCTCAGCAGGTTGCCTTGTAAGAATCTGCACAGGACC 26041715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471081189402187