Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq38608 147 2e-30 seq28107 132 5e-26 seq7 122 1e-22 seq32521 96.9 4e-15 seq28817 95.1 1e-14 >seq38608 Length=401930 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 160126 ATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTG 160185 || ||||||| || || ||||| |||||| ||| | ||||| |||||||| ||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 160186 AGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTG 160245 |||| |||||||||||||| || || || |||||||| | ||||| ||| |||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 160246 CTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCC 160305 ||||| || ||||||||| |||| ||||| || || || | || | || ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 160306 TTTAAT 160311 |||||| Sbjct 348742 TTTAAT 348737 >seq28107 Length=123132 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 157963 TGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGG 158022 ||| |||||||| ||||| || || || || ||| || ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 158023 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 158082 ||| || || || |||| ||||||||| || |||||||||||||| |||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 158083 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 158142 |||||| || || || || || || |||||||| ||||| | ||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 158143 GGTATTCGGTGGATCTCT 158160 |||||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq7 Length=30551617 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||||| |||| |||||||| | ||||||||||| || || || |||||||||||| Sbjct 3659803 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGT 3659744 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 || |||||| | ||||| || || |||| ||||| |||| |||||| |||| || Sbjct 3659743 GCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCA 3659684 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 | | ||||| | ||| || | ||| ||||| || || ||||| || |||||||| Sbjct 3659683 TATCTCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACT 3659624 Query 158930 TCTGATTGTGTTGTT 158944 || ||||||||| || Sbjct 3659623 TCAGATTGTGTTATT 3659609 >seq32521 Length=1850 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 160125 AATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 160184 || || ||||| || || ||||| |||||| ||| ||||| |||||||| |||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 160185 GAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGG 160235 ||||| |||||||||||||| || || || |||||||| | ||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 >seq28817 Length=50997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 158740 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 158799 ||| ||| | |||||||| |||| |||||||||| ||| ||||| || |||||| || Sbjct 35497 AGATGATGAGTACATTCTTGACGTAGCAGAAGAACAAGGCGTTGACCTTCCTTACTCATG 35556 Query 158800 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTA 158839 | ||||||||||||||||||||||| || ||| ||||| Sbjct 35557 CAGGGCTGGTGCTTGCTCTTCATGTGCTGGAAAAGTTGTA 35596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548106717891320