Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq38608 156 5e-33 seq1 141 1e-28 seq4 105 7e-18 seq32521 102 9e-17 seq7 100 3e-16 seq2 95.1 1e-14 seq3 91.5 2e-13 >seq38608 Length=401930 Score = 156 bits (172), Expect = 5e-33 Identities = 143/181 (79%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 153191 ATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTG 153250 || ||||||| || || || || |||||||||||| | || | |||||||||||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 153251 AGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTG 153310 |||| ||||| || || ||||| || || ||||||||| ||||||||||| |||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 153311 TTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTC 153370 || || |||||||| ||| | | |||||||| ||||| | ||||| || ||||||| Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 153371 T 153371 | Sbjct 348742 T 348742 >seq1 Length=28142018 Score = 141 bits (156), Expect = 1e-28 Identities = 247/355 (70%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 152455 GGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCC 152514 |||||| | || || || || || | || ||||||||||| || |||||||||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 152515 TATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGT 152574 ||| |||| || ||||| | ||||||||||| |||||||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 152575 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT--CGTCAGATGGATTC 152632 |||||| | || | || ||||||||| | || || | ||||| ||| | ||| || Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTGTC 23237678 Query 152633 AGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCA 152692 | | || || | ||| ||||||| || || ||||| ||||||| |||| ||||| | Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 152693 TGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCG 152751 || | || || |||||||| || | ||| || | | || || || ||||| || | Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCACA 23237797 Query 152752 TTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTC 152806 ||||| ||||| | | |||||||||| || || || || || || | |||| Sbjct 23237798 TTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq4 Length=28907061 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 |||||||| ||||| || ||| | |||||||| | || || || || ||||| Sbjct 20821550 TACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGCCGCGCTGGA 20821491 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 ||||| || |||||||||| |||||||| |||| |||| |||||| ||| || Sbjct 20821490 GCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCT 20821431 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACT 152183 ||||||||||| | || || | ||| || ||||| ||||||||| | ||||||||| Sbjct 20821430 TTCTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCCTATCCAACT 20821371 Query 152184 TCTGATGT 152191 | || || Sbjct 20821370 GCAGACGT 20821363 >seq32521 Length=1850 Score = 102 bits (112), Expect = 9e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 153190 AATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTT 153249 || || ||||| || || || || |||||||||||| || | ||||||||||||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 153250 GAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGG 153300 ||||| ||||| || || ||||| || || ||||||||| ||||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 >seq7 Length=30551617 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 |||||| |||||||| ||||| || ||| | ||||||||| | || || ||| Sbjct 3659812 GATGACACTTACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGT 3659753 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGT 152114 ||||||||||| || || | |||||||| ||| |||| |||| | || |||||| | Sbjct 3659752 CGTGCTGGTGCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCT 3659693 Query 152115 GACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCA 152174 || |||| | || || | || || | ||| || ||||| ||||||||||| Sbjct 3659692 GATGGCTCATATCTCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCC 3659633 Query 152175 TATCCAACTTCTGAT 152189 ||||||||||| ||| Sbjct 3659632 TATCCAACTTCAGAT 3659618 >seq2 Length=32560536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 152018 TGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGTGCATGTTCCTCTTG 152077 |||||||||| ||| |||| | ||||| || | |||||| | ||||| ||||| Sbjct 25898690 TGCTGAGGAAGTTGGAATTGAACTTCCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTG 25898749 Query 152078 TGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCATTCTTGGATGATGA 152137 ||||||||| |||| | ||||| ||| ||||| || || || | |||||||| Sbjct 25898750 TGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAAGATGGTTCTTTTCTTGATGATGA 25898809 Query 152138 CCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACTTCTGATGTCAC 152194 ||||||||| ||| | || || || |||||||| | || || |||||||| || Sbjct 25898810 ACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCTTTCCCTACATCTGATGTTAC 25898866 >seq3 Length=31061273 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 153170 GAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGG 153229 |||| ||||||| || || || || ||||| || || ||||| |||||||||||| | Sbjct 10151969 GAATAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAAGAAATCCGCA 10151910 Query 153230 CGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATAT 153272 | | |||||||||||||||||||| ||||| || || ||||| Sbjct 10151909 CAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 10151867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549354108695720