Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 4e-14 >seq3 Length=31061273 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||| | |||||||| |||||| |||||| ||| || | || ||| || Sbjct 22709544 GCTGCAAATTACTTGAACATCAAGAGTCTGCTGGATCTTACCTGCCAGACAGTAGCCGAC 22709603 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || ||||| |||||||||||||||||||| ||| Sbjct 22709604 ATGATCAAGGGGAAGACACCGGAGGAAATCCGCAAGACCTTTAACATTAAG 22709654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103934492064167