Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq28626 152 5e-32 seq28674 138 1e-27 seq9364 116 3e-21 seq28803 113 4e-20 seq4 113 4e-20 seq3 109 5e-19 seq1 105 6e-18 seq5139 93.3 4e-14 seq28613 84.2 2e-11 >seq28626 Length=87040 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||||||| ||||| || || || || |||||| || Sbjct 42594 ACCATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCC 42535 Query 24761 ACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 |||| || | || |||| ||| | ||| ||||||||||| |||||||| ||||| || Sbjct 42534 TCCGATACCATCGACAACGTCAAAGCCAAA-ATCCAAGACAAGGAAGGAATTCCTCCTGA 42476 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| || || ||||||||||| ||||| || |||| ||| ||| | | | ||||| Sbjct 42475 TCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTA 42416 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || ||||| ||||| | | |||||||| || Sbjct 42415 TAATATCCAGAAAGAGTCTACGCTACATTTGGTTCTTAGGTTGCGCGGTGG 42365 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | || || || || ||||| || || || || | Sbjct 42363 ATGCAGATTTTTGTGAAGACGTTGACGGGGAAGACGATTACTCTTGAGGTGGAGAGTTCT 42304 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || || || || || || || || |||||| Sbjct 42303 GATACTATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCACCTGATCAA 42244 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| |||||||| |||||| ||| | | |||||||| Sbjct 42243 CAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGATGAACTCTTGCTGATTATAAT 42184 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||||| ||||| ||| Sbjct 42183 ATTCAGAAAGAATCTACACTTCAC 42160 >seq28674 Length=75340 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| ||||| || ||||| || || |||||||| ||| | | Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||| ||||| ||||||||||| ||||| |||||| Sbjct 20876 GACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 20935 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || || |||| ||| |||| | | |||||||| Sbjct 20936 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAAT 20995 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || || ||||| Sbjct 20996 ATCCAGAAAGAGTCTACGCTTCATTTGGT 21024 Score = 113 bits (124), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| |||||||| ||||| || || || || || ||| || || Sbjct 20592 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCC 20651 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| |||||||| || |||||||| || || || || Sbjct 20652 GACACCATCGACAACGTCAAAGCCAAA-ATCCAAGATAAGGAAGGAATTCCACCAGACCA 20710 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||| ||| | ||||| ||||| ||||| || || || Sbjct 20711 ACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGA 20746 >seq9364 Length=1264 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || || ||||| || ||||| || ||||| || | Sbjct 739 GATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGAGTTC 680 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| || |||| || | ||| | ||| || ||||| || ||||| || || || || | Sbjct 679 CGATACCATAGACAATGTTAAGGCCAAA-ATTCAAGATAAGGAAGGGATCCCACCGGACC 621 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || |||||||| ||||| || |||||||||||||| | | | | | | ||||| | Sbjct 620 AGCAGCGTTTGATTTTTGCTGGAAAACAGCTGGAGGACGGGCGGACCCTTGCCGATTACA 561 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| |||||||| || || || || ||||| Sbjct 560 ACATCCAAAAGGAGTCCACCCTCCATTTGGT 530 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || |||||||| | || || || | | Sbjct 282 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATTACTTTGGAGGTTGAGAGCTCA 223 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || ||||| || || || || || || || Sbjct 222 GACACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 163 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || || ||||| || ||| | ||| || | ||||| ||| Sbjct 162 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 103 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || | || | || ||| | ||||| Sbjct 102 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGG 56 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || ||||| || || | Sbjct 510 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCATCACCCTCGAGGTGGAGAGTTCT 451 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || ||||| ||||||||||| ||||| || || || || Sbjct 450 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 391 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || ||||| || ||| || | | | | ||||| ||| Sbjct 390 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 331 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || || | || |||||| | || || || Sbjct 330 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGTGG 284 >seq28803 Length=52646 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || ||||| || || || || || || || || | Sbjct 33767 ATGCAGATCTTTGTTAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 33708 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || ||||| ||||||||||| ||||| || || || || Sbjct 33707 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 33648 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || ||||| || ||| || | | | | ||||| ||| Sbjct 33647 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 33588 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || || | || |||||| | || ||||| Sbjct 33587 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGAGG 33541 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || ||||| | || |||||| | Sbjct 38972 ATGCAGATCTTTGTGAAGACGTTGACAGGGAAGACCATTACATTGGAGGTAGAAAGTTCT 38913 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||| || || ||||| |||||||| || || ||||| Sbjct 38912 GATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAG 38853 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| || |||||||| || | | | | || || ||| Sbjct 38852 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 38793 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || ||| | |||||||| Sbjct 38792 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCG 38758 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| | || |||||| | Sbjct 32759 ATGCAGATCTTTGTGAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTAGAAAGTTCT 32700 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||| || || ||||| |||||||| || || ||||| Sbjct 32699 GATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAG 32640 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| || |||||||| || | | | | || || ||| Sbjct 32639 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 32580 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || || | |||||||| Sbjct 32579 ATTCAGAAGGAATCTACTCTTCATCTTGTGTTGCG 32545 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| | || || || | | Sbjct 33311 ATGCAGATCTTTGTGAAGACATTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGCTCA 33252 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||||| ||||| || ||||| || || || ||||| || || Sbjct 33251 GACACCATTGACAATGTAAAAGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 33192 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || ||||| || ||| |||| | || | ||||||||| Sbjct 33191 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCTGATTATAAC 33132 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || |||||||| || || || |||| Sbjct 33131 ATCCAGAAGGAATCCACCCTTCATCTTG 33104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| |||| || || || || || || || || || ||||| || | Sbjct 33996 GATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTTGAAGTTGAGAGTTC 33937 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||| | || || ||||| ||||| || ||||| || || || || || Sbjct 33936 AGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCA 33877 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || || ||||||||||| | | | | | | ||||| || Sbjct 33876 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCGATTACAA 33817 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| |||||||| || || || || |||||| Sbjct 33816 CATACAAAAGGAGTCAACCCTTCATTTGGTG 33786 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || | || || || | | Sbjct 33539 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCA 33480 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || || || || || || || Sbjct 33479 GACACTATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAG 33420 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || || ||||| || ||| | ||| || | ||||| ||| Sbjct 33419 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 33360 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || | || | || ||| | ||||| Sbjct 33359 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGGTTGAGGGGAGG 33313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| | || |||||| | Sbjct 8663 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAGACCATTACTTTGGAGGTAGAAAGTTCA 8722 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || || | ||| ||||| || || ||||| |||||||| || || ||||| Sbjct 8723 GATACAATCGATAATGTTAAGGCAAAA-ATACAGGACAAGGAAGGAATCCCACCAGATCA 8781 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| ||||| || |||||||| || | | | | || || || Sbjct 8782 GCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAA 8841 Query 24883 CATTC 24887 ||||| Sbjct 8842 CATTC 8846 >seq4 Length=28907061 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || || || || || || || || || || | Sbjct 27565455 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 27565514 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || ||||| ||||| |||||||| || || || ||||| Sbjct 27565515 GACACCATAGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCAGATCAG 27565574 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| |||||||| || ||||| || ||| |||| | || | ||||||||| Sbjct 27565575 CAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAAC 27565634 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || ||| | || ||||| Sbjct 27565635 ATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCG 27565669 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| | || |||||| | Sbjct 27565911 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATTACATTGGAGGTAGAAAGTTCA 27565970 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||| || |||||||| || ||||| || || ||||| Sbjct 27565971 GATACGATCGATAATGTCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 27566030 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || || |||||||| || | | | | || || ||| Sbjct 27566031 CAGAGGTTGATCTTTGCTGGCAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 27566090 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || ||| | |||||||| Sbjct 27566091 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCG 27566125 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| |||| || || || || || || || || || ||||| || | Sbjct 27564998 GATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTGGAAGTTGAGAGTTC 27565057 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||| | || || ||||| ||||| || ||||| || || || || || Sbjct 27565058 AGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCA 27565117 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || || ||||||||||| | | | | | | ||||| || Sbjct 27565118 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCGATTACAA 27565177 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| |||||||| || || || || |||||| Sbjct 27565178 CATCCAAAAGGAGTCTACCCTCCATTTGGTG 27565208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| || || || || || || || || | | Sbjct 27565227 ATGCAAATATTTGTTAAGACCCTCACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTCT 27565286 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| ||||||||||| ||||| || || || || Sbjct 27565287 GATACCATTGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 27565346 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || ||||| || ||| | | | | | ||||| ||| Sbjct 27565347 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGGACCTTAGCTGATTACAAC 27565406 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||| | || |||||| | || || || Sbjct 27565407 ATCCAGAAAGAATCCACTCTTCACCTTGTCTTGCGACTTCGTGGTGG 27565453 >seq3 Length=31061273 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || || || ||||| || || | | Sbjct 8017442 GATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTTGAGTCTTC 8017501 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||||||||||| |||||||| || || || || Sbjct 8017502 AGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCTGACCA 8017561 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | ||||| ||||| || ||| |||| ||| | | | | || || || Sbjct 8017562 GCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTCTCGCCGACTACAA 8017621 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || ||||| || || ||| Sbjct 8017622 CATCCAGAAAGAATCAACTCTTCAC 8017646 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| ||||| || || ||||| | || |||||| | Sbjct 12367316 ATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACCATTACCTTGGAGGTAGAAAGTTCA 12367375 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| || ||||| || || || || || ||||| || || ||||| Sbjct 12367376 GACACAATTGATAACGTGAAGGCAAAA-ATACAGGATAAGGAGGGAATCCCACCAGATCA 12367434 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| ||||| || |||||||| || | | | || || || Sbjct 12367435 GCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAA 12367494 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || || | || ||||| | ||||| || Sbjct 12367495 CATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGCGGTGG 12367542 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| |||| |||| || || || || |||| |||||||| || | Sbjct 12365947 GATGCAAATCTTTGTTAAGGCGCTTACAGGCAAGACCGTTACTCTCGAAGTTGAGAGTTC 12366006 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||| | || || ||||| ||||| || ||||| || || | || || Sbjct 12366007 AGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCATCAGACCA 12366066 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || || |||||||||||| | | | | | | ||||| || Sbjct 12366067 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAA 12366126 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| |||||||| || || || || |||||| Sbjct 12366127 CATCCAAAAGGAGTCCACCCTCCATTTGGTG 12366157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || |||||||| | || ||||| | | Sbjct 12367088 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 12367147 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||||||||| || || || || || Sbjct 12367148 GACACTATTGACAATGTGAAGACCAAGATACAGGACAAAGAAGGTATTCCCCCAGACCAG 12367207 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || ||||| || ||| | | || | ||||||||| Sbjct 12367208 CAAAGGTTGATATTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAAC 12367267 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || ||| | || | || || | ||||| Sbjct 12367268 ATTCAGAAAGAGTCCACGCTTCACCTTGTCCTTCGTCTGAGGGGAGG 12367314 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || ||||| | || ||||| | | Sbjct 12366860 ATGCAAATCTTTGTAAAGACATTGACAGGCAAGACCATTACTTTGGAGGTAGAGAGCTCA 12366919 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| ||||||||||| || || ||||| || || Sbjct 12366920 GACACAATTGACAATGTGAAGGCTAAGATACAAGACAAAGAGGGTATCCCTCCAGACCAG 12366979 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || ||||| || ||| |||| | | || |||||| Sbjct 12366980 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGACTATAAC 12367039 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || ||| | || ||||| Sbjct 12367040 ATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCG 12367074 >seq1 Length=28142018 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || |||||||| || || || ||| | | Sbjct 1586931 ATGCAAATCTTTGTGAAGACCCTTACCGGAAAGACTATTACTCTTGAGGTTGAAAGCTCT 1586872 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || || || Sbjct 1586871 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 1586812 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | |||||||||||||| || ||||| |||||| Sbjct 1586811 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGAT 1586776 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| | | Sbjct 1587159 ATGCAGATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 1587100 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| |||||||| || || || || Sbjct 1587099 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAG 1587040 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || ||||| ||||| | | || | ||||| || Sbjct 1587039 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGTACTTTGGCCGATTACAAT 1586980 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | |||||||| Sbjct 1586979 ATCCAGAAGGAGTCAACCCTCCACCTTGTGTTGCG 1586945 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | |||||||| || || || | || || || | | Sbjct 1586637 ATGCAGATATTTGTCAAGACTTTGACCGGTAAGACCATAACCTTGGAGGTGGAGAGCTCA 1586578 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 1586577 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1586518 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || ||||| |||| ||| || | | | | ||||| || Sbjct 1586517 CAGAGGTTGATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACCCTTGCGGATTACAAT 1586458 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| |||| ||| | || || Sbjct 1586457 ATCCAGAAGGAGTCCACTCTTCACCTTGTGCTGCGTTTGAGGGGTGG 1586411 >seq5139 Length=1344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||| || ||||| |||| || || || || || || || | |||||||| || | Sbjct 1096 GATACAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCGCTCTCGAAGTTGAGAGTTC 1155 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||| | || || ||||| ||||| || ||||| | || || || || Sbjct 1156 AGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGAACCCACCGGACCA 1215 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| ||||| || || |||||||||||| | | | | | | ||||| || Sbjct 1216 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCCGATTACAA 1275 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| |||||||| || || || || |||||| Sbjct 1276 CATCCAAAAGGAGTCCACCCTCCATTTGGTG 1306 >seq28613 Length=6376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 ||||| ||||| || ||||| || || || | ||||| ||||| || || |||||||| Sbjct 5468 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAA 5527 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| | | | | ||||||||||||||||||||||| || || |||||||| Sbjct 5528 GATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACGCTTCACTTGGT 5583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449677988110280