Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq28674 89.7 4e-13 seq3 86.0 5e-12 >seq28674 Length=75340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||| ||||||||||| || ||||| || || Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| || |||||||| | || |||||| Sbjct 20876 GACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 20935 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| || || || |||| |||| ||||| | || ||||| || Sbjct 20936 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAAT 20995 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || ||||| |||||| | || |||| Sbjct 20996 ATCCAGAAAGAGTCTACGCTTCATTTGGT 21024 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | ||||| || ||| | ||| | || ||| | Sbjct 12366176 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAGACCGTCACCCTTGAGGTTGAGAGTTCG 12366235 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || |||||| ||||| ||||| | || || || Sbjct 12366236 GATACGATAGAAAATGTCAAGGTCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAG 12366295 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || |||| ||| || |||||||| ||||||| ||| ||| | || ||||||||| Sbjct 12366296 CAAAGGCTGATTTTTGCTGGAAAACAGCTTGAGGATGGCAGGACATTAGCTGATTACAAC 12366355 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || ||||| || Sbjct 12366356 ATCCAGAAGGAATCCAC 12366372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| || || | || |||||||| ||||| | || ||| || | Sbjct 12366404 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCA 12366463 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | | || || |||||| ||||| || || | ||| || || Sbjct 12366464 -GATACTATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 12366522 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || |||| ||| || || |||||||| |||| | |||| |||| |||||||| Sbjct 12366523 GCAAAGGCTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAA 12366582 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| || || ||||| || Sbjct 12366583 CATCCAGAAGGAATCCAC 12366600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412645114620143