Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq28803 107 1e-18 seq9364 107 1e-18 seq4 107 1e-18 seq3 107 1e-18 seq1 107 1e-18 seq28626 104 2e-17 seq28674 87.8 1e-12 seq28613 86.0 4e-12 >seq28803 Length=52646 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||||| ||||| || |||| |||| |||||||| ||||| || || | Sbjct 33313 CCTCCCCTCAACCGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 33372 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | ||| |||| || || |||||||| || ||||||| | |||||||||| | || Sbjct 33373 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 33432 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || | || | || | ||| || Sbjct 33433 ATACCCTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACC 33492 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 33493 TCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 33539 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || |||| ||| || ||||| ||||| || || | || | | | |||| Sbjct 33555 CAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCTGCCATC 33614 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || || |||| | |||||||||| | || | ||||| ||||| Sbjct 33615 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 33674 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| |||| | ||| ||| || |||| ||| ||||| Sbjct 33675 TTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGT 33734 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||||||||| |||||||||||||| Sbjct 33735 CTTTCCGGTGAGGGTCTTAACAAAGATCTGCAT 33767 Score = 102 bits (112), Expect = 5e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 34752 CTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATA 34811 |||||||||| | ||||| || |||| |||| |||||||| |||||||| || | | Sbjct 33086 CTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCA 33145 Query 34812 GGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA 34871 | | | |||| || || |||||||| || || |||| | |||||||||| | || | Sbjct 33146 AGGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAA 33205 Query 34872 CCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | || || ||| || | || | || | ||| || | Sbjct 33206 TGCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACCT 33265 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | | || |||||||| || || | ||||| |||||||||||||| Sbjct 33266 CCAAAGTAATGGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 33311 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| | ||| | | |||| |||| |||||| || || ||| Sbjct 32569 TCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAG 32628 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | || |||||||| | ||||||| ||||| || Sbjct 32629 ATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTTTGCCTTGAC--AT 32686 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||||| ||| || || || | || |||||||| || || | |||||| Sbjct 32687 --TATCGATTGTATCAGAACTTTCTACCTCCAAAGTAATGGTCTTCCCTGTCAAGGTCTT 32744 Query 34963 TACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 32745 CACAAAGATCTGCATG 32760 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| || ||||||||||||||| ||||| | ||| | | |||| ||| Sbjct 38764 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCC 38823 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | |||||| || || ||||||| | ||||| ||| | || | || |||||||| | | Sbjct 38824 AATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGT 38883 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 |||||| ||||| || ||||||| ||| || || || | || ||||| Sbjct 38884 ATTTTTGCCTTGAC--AT--TATCGATTGTATCAGAACTTTCTACCTCCAATGTAATGGT 38939 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || | ||||| ||||||||||||||| Sbjct 38940 CTTCCCTGTCAACGTCTTCACAAAGATCTGCATG 38973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||| || |||| |||| |||||||| |||||||| || | Sbjct 8661 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTATAATCGGCC 8602 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | | || |||| || ||||||||||| || || || || | ||||||||| | || Sbjct 8601 AAGGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 8542 Query 34871 ACCCCCTCCTTGTCGTTTATTTT 34893 | ||||| ||||| | ||| || Sbjct 8541 ATACCCTCTTTGTCTTGTATCTT 8519 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 34794 GAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTC 34853 ||||||| ||||| | ||| | | |||| |||| |||||| || || ||||||| | Sbjct 8846 GAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACC 8787 Query 34854 GTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCG 34913 ||||| ||| | || | || |||||||| | ||||||| || || || ||||| Sbjct 8786 TCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTTTGCCTTAAC--AT--TATCG 8731 Query 34914 ATTC-AT-TGGCCT--CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 ||| || || || | || || | || |||||||| || || | ||||| |||||| Sbjct 8730 ATTGTATCTGAACTTTCTACCTCCAAAGTAATGGTCTTCCCTGTCAAAGTCTTCACAAAG 8671 Query 34970 ATCTGCATG 34978 ||||||||| Sbjct 8670 ATCTGCATG 8662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/213 (67%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| |||| || || ||||||||||||||| ||||| | ||| | | |||| Sbjct 13394 CAAGACAAGGTAAAGAGTATACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATC 13335 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||| || || ||||||| | ||||| ||| | || | ||||||||||| Sbjct 13334 CTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTC 13275 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||||| || || || | || || | || ||||| Sbjct 13274 CTGTATTTTTGCCTTCAC-------ATTNNNNNNNNNNNNNCTACCTCCAGTGTAATGGT 13222 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || | ||||| |||||||||||||| Sbjct 13221 CTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 13189 >seq9364 Length=1264 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||| || |||| |||| |||||||| ||||| || || | Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | ||| |||| || || |||||||| || ||||||| | |||||||||| | || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || ||| || | || | || | ||| || Sbjct 176 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAACC 235 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || ||||| || || |||||||| ||||| |||||||| Sbjct 236 TCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || |||| ||| || ||||| ||||| || || | || | | | |||| Sbjct 298 CAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCTGCCATC 357 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || || |||| | |||||||||| | || | ||||| ||||| Sbjct 358 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 417 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| |||| | ||| ||| || || | ||| ||||| Sbjct 418 TTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCGAGGGTGATGGT 477 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| ||||| |||||||| ||||| Sbjct 478 CTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 510 >seq4 Length=28907061 Score = 107 bits (118), Expect = 1e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| || ||||||||||||||| ||||| | ||| | | |||| ||| Sbjct 27566119 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCC 27566060 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | |||||| || || ||||||| | ||||| ||| | || | ||||||||||| | | Sbjct 27566059 AATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGT 27566000 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT--TCATTGGCC--TCGACATCAACGGTTATGGT 34944 |||||| ||||| || ||||||| | || | || || || | || ||||| Sbjct 27565999 ATTTTTGCCTTGAC--AT--TATCGATCGTATCTGAACTTTCTACCTCCAATGTAATGGT 27565944 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || | ||||| |||||||||||||| Sbjct 27565943 CTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||||| || ||| ||||| |||||||| || | ||| | | |||| Sbjct 27565667 CAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCCATC 27565608 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||| || |||| | ||||| ||| | || | || || || || Sbjct 27565607 TTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCTTCTTTATC 27565548 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||| || ||||| |||| | ||| ||| || |||| ||| ||||| Sbjct 27565547 TTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGT 27565488 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||||||||| |||||||||||||| Sbjct 27565487 CTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 27565455 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||||| ||| || ||||| ||||| || || | || | | || |||| Sbjct 27565439 CAAGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCGGCCATC 27565380 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || || |||| | |||||||||| | || | ||||| ||||| Sbjct 27565379 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 27565320 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | || | ||| | ||| || |||| ||| || || Sbjct 27565319 TTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGT 27565260 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||||||||| ||||| || ||||| Sbjct 27565259 CTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 27565227 >seq3 Length=31061273 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || || ||||| ||||| ||||| | || |||| |||| Sbjct 8017654 AGAACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCT 8017595 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||||||||| || ||||||||||| | || | || |||||||| Sbjct 8017594 TCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCT 8017535 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | || | ||| || || | |||||| ||| Sbjct 8017534 TGGATCTTGGCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGTC 8017475 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || || ||||||||||| Sbjct 8017474 TTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 8017443 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||| || |||| |||| |||||||| ||||| || || | Sbjct 12366858 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366799 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | | || |||| ||||| ||||||||||| || |||| | |||||||||| | || Sbjct 12366798 AAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGGA 12366739 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | ||| || || || | || | || | || || Sbjct 12366738 ATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTACC 12366679 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || || || ||||| ||||| |||||||| Sbjct 12366678 TCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366632 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||| || | Sbjct 12367314 CCTCCCCTCAGACGAAGGACAAGGTGAAGCGTGGACTCTTTCTGAATGTTATAATCAGCC 12367255 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || |||| || || |||||||| || || |||| | |||||||||| | || Sbjct 12367254 AAAGTCCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 12367195 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | ||| || || || | || | || | ||| || Sbjct 12367194 ATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTACC 12367135 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || |||||||| || || ||||| || || |||||||| Sbjct 12367134 TCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 12367088 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | || | | |||| |||| |||||| || || || Sbjct 12367507 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAA 12367448 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | ||||| ||| | || | |||||||| || | ||||||| || ||| Sbjct 12367447 GATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGTATTTTTGCCTTCACGTT 12367388 Query 34906 TGCTATCGATTCATTGGCC--TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || | || || | || || || | ||| ||||||||||| || || ||||| Sbjct 12367387 ATCAATTGTGTC--TGAACTTTCTACCTCCAAGGTAATGGTCTTTCCGGTCAGCGTCTTC 12367330 Query 34964 ACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 12367329 ACAAAGATTTGCAT 12367316 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || |||| |||| |||||||| ||||| || || | | | | || |||| Sbjct 12366616 CAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATC 12366557 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| |||||||| || || ||||| | |||||||||| | || | ||||||||||| Sbjct 12366556 TTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTGTC 12366497 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || | || | || | ||| || || | || || || Sbjct 12366496 TTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTAATCGT 12366437 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| ||||| |||||||| Sbjct 12366436 TTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 >seq1 Length=28142018 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| |||||||||||| || || || | || | | | || Sbjct 1587176 AGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCT 1587235 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||||||||| || ||||||||||| | || | || |||||||| Sbjct 1587236 TCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 1587295 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | ||| | ||| || |||| ||| |||||| Sbjct 1587296 TGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTC 1587355 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| || || || ||||| ||||| Sbjct 1587356 TTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||| | ||| ||||||||| || || || || | | | || | || || Sbjct 1586951 ACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCGTCCTCA 1587010 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||||||||| ||||||| | ||||||||| | || | || |||||||| | Sbjct 1587011 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 1587070 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || |||||| | || | ||| | || || |||| ||| ||||||||| Sbjct 1587071 ATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1587130 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| || ||||||||||| Sbjct 1587131 CCTGTGAGAGTCTTGACGAAGATCTGCAT 1587159 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | ||| || ||||||| ||| ||||||||| || || || |||| Sbjct 1586411 CCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCA 1586470 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| |||| ||| || || || ||||||| | ||||| ||| | || Sbjct 1586471 AGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 1586530 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || ||||| | || | || | ||| || Sbjct 1586531 ATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACC 1586590 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | |||||||||||| || || | ||||| ||||| |||||||| Sbjct 1586591 TCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCAT 1586637 >seq28626 Length=87040 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | |||||| || |||| || | || ||| ||||| || ||||| |||| Sbjct 42363 TTCCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCG 42422 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | | |||| |||| |||||| || || ||||||| ||| ||||| || | | Sbjct 42423 CAAGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAG 42482 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | ||||| ||||||| | || | || || || | Sbjct 42483 GAATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTA 42542 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||||||||| || || || ||||| || || |||||||||||| Sbjct 42543 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 42592 >seq28674 Length=75340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||| |||||||||||||| || || || |||||| | || | || ||||| Sbjct 20746 TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTA 20687 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | ||||| ||||||| | || | || || || || || | ||||||| Sbjct 20686 TCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATG 20627 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || || || ||||| || || |||||||||||||| Sbjct 20626 GTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATGAT 20589 >seq28613 Length=6376 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34743 AATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||| |||||||||| | ||| ||||||| ||||| || ||||| |||||||| Sbjct 5611 AATCATGGTTCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGATTCCTTTTGAATGTT 5552 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||| || | || |||| |||| ||||| ||||| || || || |||| | ||||| Sbjct 5551 ATAATCAGCAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTG 5492 Query 34861 GTCTTGCGGCACCCCCTCCTTGTC 34884 ||| | || | || |||||||| Sbjct 5491 GTCAGGAGGGATACCTTCCTTGTC 5468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325537791702569