Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq9364 86.0 5e-12 seq4 82.4 6e-11 >seq9364 Length=1264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || || || |||||||| | ||| ||| | | Sbjct 738 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGAGTTCC 679 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || || ||| ||||| ||||| | || ||| ||| Sbjct 678 GATACCATAGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAG 619 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || |||||||||||||||| || | || || |||||| Sbjct 618 CAGCGTTTGATTTTTGCTGGAAAACAGCTGGAGGACGGGCGGACCCTTGCCGATTACAAC 559 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 558 ATCCAAAAGGAGTCCAC 542 >seq4 Length=28907061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || || || | || ||||| ||||| || | ||| ||| | Sbjct 27564999 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTGGAAGTTGAGAGTTCA 27565058 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| ||||| ||||| | || ||| ||| Sbjct 27565059 GATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAG 27565118 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||||||||||||| || | || || |||||| Sbjct 27565119 CAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCGATTACAAC 27565178 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||||||||| | || ||||| Sbjct 27565179 ATCCAAAAGGAGTCTACCCTCCATTTGGTG 27565208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398686960944139