Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq28674 105 1e-17 seq28626 91.5 2e-13 seq3 89.7 8e-13 >seq28674 Length=75340 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || ||||| || || | || || ||| | | Sbjct 20817 TGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCTG 20876 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || || || ||| ||||||||| ||||| || ||||||| Sbjct 20877 ACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAAC 20936 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || |||||||| || ||||| || ||| |||||| | | |||||||||| Sbjct 20937 AACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAATA 20996 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | ||||| || Sbjct 20997 TCCAGAAAGAGTCTACGCTTCATTTGGT 21024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || ||||| || |||||| | || || || | | Sbjct 21045 TGCAGATTTTTGTGAAGACGTTGACGGGAAAGACGATTACTTTGGAGGTGGAGAGTTCTG 21104 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || || || || ||| || || |||||||| ||||| | Sbjct 21105 ATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCACCTGATCAGC 21164 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| |||||||| | || ||| || || | | |||||||||| Sbjct 21165 AGCGATTGATCTTTGCTGGTAAACAGCTTGAAGATGGAAGGACTCTTGCTGATTATAATA 21224 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 21225 TTCAGAAAGAATCTAC 21240 >seq28626 Length=87040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || ||||| || || | || |||||| || Sbjct 42590 TGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCCG 42531 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||||| ||| || ||||| ||||| || ||||| | Sbjct 42530 ATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAGC 42471 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || |||||||| || ||||| || ||| || || | | |||||||||| Sbjct 42470 AGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAATA 42411 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | ||||| || Sbjct 42410 TCCAGAAAGAGTCTACGCTACATTTGGT 42383 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || || || || |||||| |||| || || | | Sbjct 42362 TGCAGATTTTTGTGAAGACGTTGACGGGGAAGACGATTACTCTTGAGGTGGAGAGTTCTG 42303 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || || || || ||| || || |||||||| ||||||| Sbjct 42302 ATACTATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCACCTGATCAAC 42243 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| |||||||| | || ||| |||| | | |||||||||| Sbjct 42242 AGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGATGAACTCTTGCTGATTATAATA 42183 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 42182 TTCAGAAAGAATCTAC 42167 >seq3 Length=31061273 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || |||| ||||| ||||| || || |||||| | || ||||| | | | Sbjct 12366861 TGCAAATCTTTGTAAAGACATTGACAGGCAAGACCATTACTTTGGAGGTAGAGAGCTCA- 12366919 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| || ||| |||||| ||||| || || || || || || Sbjct 12366920 GACACAATTGACAATGTGAAGGCTAAGATACAAGACAAAGAGGGTATCCCTCCAGACCAG 12366979 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || || || | || ||| ||||| | | || ||||| Sbjct 12366980 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGACTATAAC 12367039 Query 146211 ATACAAAAAGAATCGACT 146228 || || ||||| || ||| Sbjct 12367040 ATCCAGAAAGAGTCAACT 12367057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785782642698920