Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9364 156 3e-33 seq4 152 4e-32 seq3 152 4e-32 seq28803 149 5e-31 seq28674 147 2e-30 seq28626 141 7e-29 seq1 134 1e-26 seq5139 114 1e-20 seq28613 109 4e-19 >seq9364 Length=1264 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||| || || | |||||| |||||||| || || ||||| ||||| || Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| ||||| || || |||||| | ||||| |||||||| || || || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||| ||| | || | |||||| || || || Sbjct 176 ATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAAC 234 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| ||||| |||||||| | ||| || ||||| |||||||| Sbjct 235 CTCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 282 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | |||||| ||||||||||| || ||||| ||||| || | ||| | | Sbjct 296 CGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCTGCCA 355 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || |||||| | ||||| |||||||| || || || || ||||||||| Sbjct 356 TCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTG 415 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | |||||| | |||| ||||||||| || || || || || || Sbjct 416 TCTTG-AATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCGAGGGTGAT 474 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || ||||| || ||||| Sbjct 475 GGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 510 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || ||||| || ||||| ||||| ||||| |||| ||| || Sbjct 523 ACGGAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCC 582 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || ||||| |||||| | ||||| | ||||| ||||| || || || || || Sbjct 583 GTCCTCCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTT 642 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | || ||| | |||| || || ||| || ||||||||||| | Sbjct 643 ATCTTG-AATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAA 701 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||| || ||||| || ||||| Sbjct 702 TGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 >seq4 Length=28907061 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| ||| || || | |||||| |||||||| || || ||||| ||||| || Sbjct 27565909 CCTCCCCTCAGACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 27565850 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| ||||| || || |||||| | ||||| |||||||||||||| ||| Sbjct 27565849 AAGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGA 27565790 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| |||| || || ||| | || | ||||| || || || Sbjct 27565789 ATGCCCTCCTTGTCCTGTATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCAACC 27565730 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | |||||| || || ||||| | ||||| ||||| |||||||| Sbjct 27565729 TCCAAAGTTATTGTCTTACCAGTAAGAGTTTTCACAAAAATCTGCAT 27565683 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || | ||||| || || ||||| || ||||||||||| || | ||| | Sbjct 27565670 ACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCC 27565611 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || || ||| | ||||| || |||||||| || |||||||| ||||| Sbjct 27565610 ATCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCTTCTTT 27565551 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||||| || |||||| | |||| ||||||||| || || ||||| || || Sbjct 27565550 ATCTTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGAT 27565491 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| |||||||| |||||||| Sbjct 27565490 GGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 27565455 Score = 136 bits (150), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||||||||||| || ||||| ||||| || | ||| || ||| ||||| || Sbjct 27565429 TGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCGGCCATCTTCGAGCTGC 27565370 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| |||||||| || || || || |||||||||||||| ||| || Sbjct 27565369 TTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG-AATCTT 27565311 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | |||||| | || | || ||||| || || ||||| || || || || || || Sbjct 27565310 GGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCGGT 27565251 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| ||||||||||| ||||| Sbjct 27565250 GAGGGTCTTAACAAATATTTGCAT 27565227 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || || || || ||||| ||||| ||||| |||| ||| || Sbjct 27565214 ACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCC 27565155 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || |||||| | |||| | ||||| ||||| || || || || || Sbjct 27565154 GTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTT 27565095 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || ||| | |||| || || ||| || ||||| ||||| | Sbjct 27565094 ATCTTG-AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGA 27565036 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| ||||| || || ||||| Sbjct 27565035 TGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 >seq3 Length=31061273 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||| || || | |||||| |||||||| || || ||||| ||||| || Sbjct 12366858 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366799 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || || ||| | ||||| |||||||| || || ||| Sbjct 12366798 AAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGGA 12366739 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| |||||||||| || || ||| | || | ||||| || |||||| Sbjct 12366738 ATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTACC 12366679 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || ||||| || | || |||||||| |||||||| Sbjct 12366678 TCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366632 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| ||| || || | ||||||||||| ||||| |||||||||||||| || Sbjct 12367314 CCTCCCCTCAGACGAAGGACAAGGTGAAGCGTGGACTCTTTCTGAATGTTATAATCAGCC 12367255 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || |||||| ||||||| |||||||| || || ||| Sbjct 12367254 AAAGTCCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 12367195 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| |||||||| ||| || || || || ||| | || | |||||| || ||||| Sbjct 12367194 ATACCTTCTTTGTCCTGT-ATCTTGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTAC 12367136 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| || || || | || || || || |||||||| Sbjct 12367135 CTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 12367088 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | |||||| |||||||| || || ||||| ||||| || | ||| || | Sbjct 12366618 CGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCA 12366559 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | |||| |||||||| || || ||||||||||| ||| Sbjct 12366558 TCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTG 12366499 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || ||| | || | ||| || || || || || | ||| || Sbjct 12366498 TCTTG-AATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTAAT 12366440 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || |||||||| |||||||| Sbjct 12366439 CGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || ||||| || ||||| ||||| ||||| |||| ||| || Sbjct 12366163 ACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCC 12366104 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | |||| | ||||| || | || || || || || Sbjct 12366103 ATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGGATCCCTTCCTT 12366044 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || ||| | |||| || || ||| || ||||| ||||| | Sbjct 12366043 ATCTTG-AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTAA 12365985 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | | |||||||| || ||||| Sbjct 12365984 CGGTCTTGCCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || | ||||| || || ||||| || |||||||| || |||| || | Sbjct 12367075 ACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCAGCAAGAGTTCTGCC 12367016 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || | || ||||| || || || ||||||||||| Sbjct 12367015 ATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTT 12366956 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||||| || || ||| | || | ||||| || ||||| || | ||| || Sbjct 12366955 GTCTTGTATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAAAGTAAT 12366896 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || ||||| || ||||| Sbjct 12366895 GGTCTTGCCTGTCAATGTCTTTACAAAGATTTGCAT 12366860 >seq28803 Length=52646 Score = 149 bits (164), Expect = 5e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | |||||| ||||||||||| || ||||| ||||| || | ||| | | Sbjct 33553 CGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAGGTCCTGCCA 33612 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || |||||| | ||||| |||||||| || || || || ||||||||| Sbjct 33613 TCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTG 33672 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | |||||| | |||| ||||||||| || || ||||| || || Sbjct 33673 TCTTG-AATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGAT 33731 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| |||||||| |||||||| Sbjct 33732 GGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCAT 33767 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| || || || | |||||| |||||||| || || ||||| ||||| || Sbjct 33313 CCTCCCCTCAACCGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 33372 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| ||||| || || |||||| | ||||| |||||||| || || || Sbjct 33373 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 33432 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| |||||||| ||| || | || ||| | || | |||||| || || || Sbjct 33433 ATACCCTCCTTGTCTTG-AATCTTAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAAC 33491 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | |||||| || |||||||| | || || ||||| |||||||| Sbjct 33492 CTCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 33539 Score = 136 bits (150), Expect = 3e-27 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 29561 CTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 ||||||||||||| || || | |||||| |||||||| || || ||||||||||| || | Sbjct 33086 CTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCA 33145 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 ||| | ||| || || || || |||||| | ||||| |||||||| || || |||| Sbjct 33146 AGGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAA 33205 Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | ||||| ||||| || ||| || | ||| ||| | || | ||||| || || || Sbjct 33206 TGCCCTCCTTGTCCTG-AATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACC 33264 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || || || || || || ||||| |||||||| Sbjct 33265 TCCAAAGTAATGGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 33311 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| ||| || || | |||||| |||||||| || || ||||| ||||| || Sbjct 13187 CCTCCCCTCAGACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCT 13128 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| |||| || || |||||| | ||||| ||||||||||||| ||| Sbjct 13127 AAGGTTCGGCCATCTACGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGAGGGA 13068 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||| ||||| |||| || || ||| | || | ||||| || || || Sbjct 13067 ATGCCCTTCTTGTCCTGTATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACC 13008 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | |||||| || || ||||| | ||||| || || |||||||| Sbjct 13007 TCCAAAGTTATCGTCTTACCAGTAAGAGTTTTGACGAAAATCTGCAT 12961 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || || || ||||| ||||| ||||| |||| ||| || Sbjct 33780 ACGGAGCACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCC 33839 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || |||||| | |||| | ||||| ||||| || || || || || Sbjct 33840 GTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTT 33899 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || ||| | |||| || || ||| || ||||||||||| | Sbjct 33900 ATCTTG-AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGA 33958 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| ||||| || || ||||| Sbjct 33959 TGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 120 bits (132), Expect = 2e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||| || || | |||||| |||||||| || || ||||||||||| || Sbjct 8661 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTATAATCGGCC 8602 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || ||||| || |||||| | || | || ||||| || || || Sbjct 8601 AAGGTACGGCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 8542 Query 29680 ATACCCTCTTTGTCTTGTA 29698 ||||||||||||||||||| Sbjct 8541 ATACCCTCTTTGTCTTGTA 8523 >seq28674 Length=75340 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||||||||| || ||||| || || |||||||| |||| || | | ||| Sbjct 21027 AGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCAAGAGTTCTACCATCT 20968 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || || ||| | ||||||| ||| ||||| || ||||| || ||||| ||| Sbjct 20967 TCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGAATTCCTTCTTTATCT 20908 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| || || | || | ||||||||| ||| ||||| || || || || Sbjct 20907 TG-AATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACTTCGAGTGTGATGGT 20849 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| |||||| || || || ||||| Sbjct 20848 TTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| ||||| ||||||||||| ||||||||| | || Sbjct 20803 ACGGAGAACGAGATGGAGCGTTGATTCTTTTTGGATGTTATAANNNNNNNNCGGCCG--- 20747 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||||||||| || || | || | | || || || || ||||| || || || Sbjct 20746 -TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTT 20688 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| |||||| | || | ||||| || ||| || || || ||||| Sbjct 20687 ATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTAT 20628 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| |||| |||||| || || |||||||| Sbjct 20627 GGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 20592 >seq28626 Length=87040 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| | || |||||||| ||||| || ||||| || || ||||||||||| Sbjct 42364 TCCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGC 42423 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | ||| || || ||| | ||||||| |||||||| || || Sbjct 42424 AAGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 42483 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || |||||||| | ||| |||||| | || | || || || |||||| Sbjct 42484 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTAC 42543 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| |||||||| |||| |||||| || || |||||||| Sbjct 42544 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 >seq1 Length=28142018 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||||||||| | ||||| ||||| || || || || || ||||||||| Sbjct 1586411 CCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCA 1586470 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||||||||| ||| | ||||| || |||||||| || ||| Sbjct 1586471 AGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 1586530 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || || | || |||||| | || | ||||| || || || Sbjct 1586531 ATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACC 1586590 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||||| || || || || || || || |||||||||||||| Sbjct 1586591 TCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCAT 1586637 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| || || | |||||||||||| || || ||||| || ||||| ||| Sbjct 1587161 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCA 1587220 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | || || || || | || | | |||||| ||||| ||| Sbjct 1587221 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGA 1587280 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || |||||| | || | |||||||| || || Sbjct 1587281 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 1587340 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | ||||| || || || ||||| Sbjct 1587341 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 >seq5139 Length=1344 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| || ||||| || ||||| ||||| ||||| |||| ||| || Sbjct 1312 ACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCC 1253 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | |||| | ||||| ||||| || | || || || Sbjct 1252 ATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGTTCCCTTCCTT 1193 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || ||| | |||| || || ||| || ||||| |||| | Sbjct 1192 ATCTTG-AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGCGA 1134 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| ||||| || || || || Sbjct 1133 TGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGTAT 1097 >seq28613 Length=6376 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || ||||| |||||||| ||||| ||||||||||||||||| || Sbjct 5602 TCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGATTCCTTTTGAATGTTATAATCAGC 5543 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| ||| || || || || |||||| | ||||| || ||||| || || || Sbjct 5542 AAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 5483 Query 29679 AATACCCTCTTTGTC 29693 ||||| || ||||| Sbjct 5482 GATACCTTCCTTGTC 5468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385035861061191