Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq28107 154 2e-32 seq38608 141 1e-28 seq7 131 2e-25 seq29563 96.9 4e-15 seq28817 96.9 4e-15 seq32521 84.2 2e-11 >seq28107 Length=123132 Score = 154 bits (170), Expect = 2e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 157434 TGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 157493 |||||| || || || || || || ||||| | |||||| ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 157494 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCT 157553 ||| || || || |||| ||||||||| || |||||||||||||| |||| |||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 157554 CGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 157613 || || ||||| ||||| |||||||||||||||||||| ||||| | || || ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 157614 GGTATTCGGTGGATC 157628 |||||||| || || Sbjct 14999 TGTATTCGGCGGCTC 15013 >seq38608 Length=401930 Score = 141 bits (156), Expect = 1e-28 Identities = 138/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 159607 ATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTG 159666 || ||||||| || || ||||| |||||| ||| | ||||| |||||||| ||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 159667 AAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTG 159726 | || ||||||||||| || ||||| | || ||||| | ||||||||| |||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 159727 CTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 ||||| || ||||||||| | || ||||| || || ||||||||| | || ||||| Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 348745 >seq7 Length=30551617 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 ||||| |||| |||||||| | ||||||||||| || || || |||||||||||| Sbjct 3659803 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGT 3659744 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158341 || |||||| | ||||| || || |||| ||||| |||| |||||| |||| || Sbjct 3659743 GCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCA 3659684 Query 158342 TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158401 | || ||||| | |||||| | ||| ||||| || || ||||| || |||||||| Sbjct 3659683 TATCTCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACT 3659624 Query 158402 TCTGATTGTGTTGTT 158416 || ||||||||| || Sbjct 3659623 TCAGATTGTGTTATT 3659609 >seq29563 Length=4854 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 157504 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAG 157563 || || |||| ||||||||| || ||||| |||||||| |||| |||| | || || ||| Sbjct 4304 TTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTTCAG 4363 Query 157564 GCAGAGCACAATATTCTTATGCATCCGTTCCACATG 157599 | ||||| ||||||||||||||||| || |||||| Sbjct 4364 GTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399 >seq28817 Length=50997 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158212 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTG 158271 ||| ||| | |||||||| |||| |||||||||| ||| ||||| || ||||| || Sbjct 35497 AGATGATGAGTACATTCTTGACGTAGCAGAAGAACAAGGCGTTGACCTTCCTTACTCATG 35556 Query 158272 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 158331 | ||||||||||||||||||||||| || ||| ||||| ||| || ||| | Sbjct 35557 CAGGGCTGGTGCTTGCTCTTCATGTGCTGGAAAAGTTGTAGAAGGAGAAGTGGATAATTC 35616 Query 158332 TGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGC 158391 ||| | ||||| || || | |||| | | ||| |||||||| || ||||| || Sbjct 35617 AGATAATAGCTTCCTTGATGAGGGTCAATTAAGTGAAGGGTTTGTTCTCACATGTGTTGC 35676 Query 158392 ATATCC 158397 || || Sbjct 35677 TTACCC 35682 >seq32521 Length=1850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159606 AATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 159665 || || ||||| || || ||||| |||||| ||| ||||| |||||||| |||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 159666 GAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGG 159716 || || ||||||||||| || ||||| | || ||||| | ||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545007431508080