Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq28107 145 9e-30 seq2 134 2e-26 seq38608 129 7e-25 seq7 111 2e-19 seq28817 91.5 2e-13 seq4 89.7 6e-13 seq1 89.7 6e-13 >seq28107 Length=123132 Score = 145 bits (160), Expect = 9e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 177941 TGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCG 177999 ||||||||| || || || |||||||| || ||||| ||||| | |||| || | | Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGT-TTTCTTGATCTACCCAATAG 14877 Query 178000 GTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 178059 |||| || || || |||| ||||||||| || |||||||||||||| |||| ||| Sbjct 14878 GTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGA 14937 Query 178060 TTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTG 178119 ||||||| || || || || ||||| |||||||| ||||| ||||| | ||||| |||| Sbjct 14938 TTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTG 14997 Query 178120 GGGTATTCGGTGGATCTCT 178138 | |||||||| || || || Sbjct 14998 GTGTATTCGGCGGCTCACT 15016 >seq2 Length=32560536 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||||||| | |||||| ||||| ||||| |||||| |||| || ||||| ||| Sbjct 25898655 TTTGACTGTCCAGATGATGTTTACATTCTTGACCATGCTGAGGAAGTTGGAATTGAACTT 25898714 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || | |||||| | |||||| | |||||||||||| | ||| | || | | Sbjct 25898715 CCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAAT 25898774 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || ||||| || ||||| ||||||||||| || |||| || ||| | | | Sbjct 25898775 GTTAATCAGGAAGATGGTTCTTTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTT 25898834 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| || || | ||| ||||| ||| || ||||| ||| | || || || ||||| Sbjct 25898835 ACTTGTGTTGCTTTCCCTACATCTGATGTTACTATTGAGACTCACAAGGAAGAGGAACT 25898893 >seq38608 Length=401930 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 179771 ATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCG 179830 || ||||||| ||||| || || |||||| ||| | ||||| ||||||||||| || | Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 179831 AGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTG 179890 |||| ||||| || || || ||||| | || ||||| | ||||||||| |||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 179891 CTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCAC 179950 ||||| || ||||||||| | || ||||| || || || ||||| |||| ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 179951 T 179951 | Sbjct 348742 T 348742 >seq7 Length=30551617 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 ||||||| |||||| | ||||| || || | ||||| |||| ||||| || || | Sbjct 3659814 CTGATGACACTTACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGT 3659755 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 ||||||||||||| || |||||||||||||| || | ||| || |||||||||||| Sbjct 3659754 GTCGTGCTGGTGCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGT 3659695 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||| || | || || || | ||||| | ||| ||| | | || || || | Sbjct 3659694 CTGATGGCTCATATCTCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTG 3659635 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 | || || || || |||||| | ||| | || | ||||| | ||| || || ||| Sbjct 3659634 CCTATCCAACTTCAGATTGTGTTATTCACACGCACAAAGAAGGCGATCTCTATTGA 3659579 >seq28817 Length=50997 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 138523 TGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTAC 138582 ||| | |||||| ||||||| ||||| | || || ||| ||| |||| ||||| ||| Sbjct 35492 TGTCCAGATGATGAGTACATTCTTGACGTAGCAGAAGAACAAGGCGTTGACCTTCCTTAC 35551 Query 138583 TCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGAT 138642 || || | |||||||| || ||| | |||||||| ||| | || |||||| || ||| Sbjct 35552 TCATGCAGGGCTGGTGCTTGCTCTTCATGTGCTGGAAAAGTTGTAGAAGGAGAAGTGGAT 35611 Query 138643 CAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGC 138702 | || || | ||||||||||| | ||| | | ||| ||| | | || || Sbjct 35612 AATTCAGATAATAGCTTCCTTGATGAGGGTCAATTAAGTGAAGGGTTTGTTCTCACATGT 35671 Query 138703 GTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 || || ||||| || || | | ||||| || | || ||||||||||| Sbjct 35672 GTTGCTTACCCTCGTTCAGACCTTGTTATTGAGACACACAAGGAGGACGAACT 35724 >seq4 Length=28907061 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 |||||| |||||| | ||||| || || | || || |||| || || || || || Sbjct 20821559 GATGATGTTTACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGC 20821500 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 || ||||| ||||| ||||| |||||||| || | ||| || | || ||||||||| Sbjct 20821499 CGCGCTGGAGCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCT 20821440 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCA 138708 || |||||| | ||||| | ||| || | ||| ||| | | || || || | Sbjct 20821439 GATGGCTCTTTCTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCC 20821380 Query 138709 TACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 || || || | || | ||||||||||| | || || | ||||| |||||| Sbjct 20821379 TATCCAACTGCAGACGTTGTAATTGAAACTCACAAGGAAGGAGAACTTTACTGA 20821326 >seq1 Length=28142018 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||||| || ||| | ||||| || || || | || || || ||||| || | |||||| Sbjct 46290 TACATTCTGGATTCAGCTGAAGATGCTGGAGTGGAGCTACCTTACTCATGCAGAGCTGGT 46231 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||| ||||| || || ||||| ||| | || ||||||||||| || || Sbjct 46230 GCATGCTCTACTTGTGCCGGCCAAGTAGTTTCAGGTTCCGTTGATCAGTCTGATCAATCC 46171 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAGCATACCCCAC 138716 || || ||||| | ||| | | || ||| || | | | || || || | ||||| | Sbjct 46170 TTTCTCGATGAGCAGCAAGTCG-AGAAGGGTTATCTTCTCACATGTGTCTCGTACCCGAA 46112 Query 138717 ATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 |||||| | ||| | || | || ||||| ||||| | |||| Sbjct 46111 ATCCGACACCGTGATTTACACACACAAGGAGGAGGAACTCTTCTGA 46066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605371551127160