Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq28803 89.7 5e-13 seq9364 87.8 2e-12 seq3 87.8 2e-12 seq1 86.0 6e-12 >seq28803 Length=52646 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| || || || |||||||||||||||||| Sbjct 33769 CCACCACGGAGACGGAGCACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCA 33828 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||| || || || || |||||| | |||||||| ||||| || || || Sbjct 33829 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGG 33888 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || || | | || | || |||| || ||| Sbjct 33889 ATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACT 33948 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | |||||||| || | || || ||||| |||||||| Sbjct 33949 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 >seq9364 Length=1264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | ||||| | || | ||||| || ||||| || || |||||||||||| | Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | |||||||| || || |||||| |||||| | |||||| || || || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| ||| || ||| | | || | ||||||| | || || Sbjct 176 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAACC 235 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| || | || || || || || |||||| Sbjct 236 TCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATA 283 >seq3 Length=31061273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 137255 ||||| || | ||||| || ||||| || || ||||||||||| ||| | ||| || Sbjct 12366390 CGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCT-AATGTCCTGCC 12366332 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || || ||||| |||||| | ||||| | |||||| || || || || ||||| || Sbjct 12366331 ATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGTGGAATACCTTCCTT 12366272 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| ||| || || | | ||| | ||| || | || || |||| || || Sbjct 12366271 GTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCAACCTCAAGGGTGAC 12366212 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||||| | || || || || ||||||||| Sbjct 12366211 GGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCATA 12366175 >seq1 Length=28142018 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| | ||||| || || || || || || |||||||| Sbjct 1587161 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCA 1587220 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | || || || || |||| ||||||||||| || ||||| Sbjct 1587221 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGA 1587280 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | ||||| | | || || Sbjct 1587281 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 1587340 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| ||||| | |||||| ||||| |||||||| Sbjct 1587341 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488305523353200