Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq28674 86.0 1e-11 >seq28674 Length=75340 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/122 (75%), Gaps = 11/122 (9%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| | || ||||| ||||||||||||| |||||||||| ||||| || Sbjct 21015 AGCGTAGACTCTTTCTGGATATTATAATCAGCAAGAGTTCTACCATCTTCCAATTGCTTT 20956 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | || ||||||| | ||| | ||| |||| ||||||||||||||||| Sbjct 20955 CCTGCAAAGATCAATCGTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTTGCC 20896 Query 81753 TT 81754 || Sbjct 20895 TT 20894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902970211115360