Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq4 82.4 2e-11 >seq4 Length=28907061 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1413 AAGTATTCAATTGATGTGGGCGCTGGAGTTATTGACCCTGATTATCGTGGAAGTATCAGT 1472 ||| |||| |||||||| || |||||||| ||||| |||||||| | ||| | | | Sbjct 15999717 AAGCATTCTATTGATGTTGGTGCTGGAGTGATTGATGCTGATTATAGAGGACCTGTTGGG 15999776 Query 1473 GTTGTTTTATTTAATCATTCGGATGTGCCTTTCCATGTGTCGAGGGGAGACAGAATAGCT 1532 ||| | | ||||||||||| ||||| ||| ||||| | || || ||||| ||| Sbjct 15999777 GTTATACTGTTTAATCATTCTGATGTTGATTTTGATGTGAAAATTGGTGATAGAATTGCT 15999836 Query 1533 CAGTTAAT 1540 |||||||| Sbjct 15999837 CAGTTAAT 15999844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139762357845152