Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28226 179 9e-40 seq2 150 4e-31 >seq28226 Length=90112 Score = 179 bits (198), Expect = 9e-40 Identities = 340/495 (69%), Gaps = 13/495 (3%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| |||| ||||||||| || |||||||| |||||||| ||||| || Sbjct 34575 TTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGAAATGGATC------GATTCATCTG 34628 Query 131847 ATT---TTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTG 131903 ||| || || ||| | || |||||||||||||||||||||||||| || || || Sbjct 34629 ATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCTGGAA 34688 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 ||||||||| || ||||||||||| || ||||| || |||||||| | | || || | Sbjct 34689 GTTTCTGTGCAATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAA 34748 Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAA 132023 || | | || || | || |||| | | ||| || ||||| || || ||| Sbjct 34749 ATGAGCTTATTTCACGCGACGAAGGACTTCATTGCGATTTTGCCTGTTTGATTTAT-TCG 34807 Query 132024 AATTTGCTG-ATAAACTTGATGAAAATAATATTAA-ACAACTTATAAGCGAAGCAGTTGA 132081 |||| | ||||||| |||| | | | || |||| || | | || || ||||| Sbjct 34808 CTTTTGAGGAATAAACTGAGTGAAGAGCGTGTGAAGACAA-TTGTGCGTGACGCGGTTGA 34866 Query 132082 TATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGA 132141 || |||| ||| ||| || ||||| | |||||| |||| |||| ||||||| ||| Sbjct 34867 GATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCTTGCGCTTTGGTTGGAATGAATGGTGA 34926 Query 132142 CTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTC 132201 | |||| |||| ||||| || ||||||||| | || | | ||||| | | Sbjct 34927 TTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTGTTGTGTGAGCTTGGTTGTGA 34986 Query 132202 CAAGATTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAA 132261 || |||||||| || || || | | |||||||| | ||||||||| | || || Sbjct 34987 GAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTTCGCTTCAGGGGAA 35046 Query 132262 AACGAACTTCTTCGA 132276 ||| ||||| || || Sbjct 35047 AACTAACTTTTTTGA 35061 >seq2 Length=32560536 Score = 150 bits (166), Expect = 4e-31 Identities = 321/479 (67%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATT---TTTCTACA 131857 |||||||| || |||||||| |||||||| ||||| || ||| || || | Sbjct 19587193 AAGAAAGCTGATTGGGCTATGAAATGGATC------GATTCATCTGATTCATTTGCTGAA 19587246 Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || |||||||||||||||||||||||||| ||||| || ||| ||||| || Sbjct 19587247 AGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTTTCTGGAAGTTTTTGTGCAATT 19587306 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 || |||||||| || ||||| || |||||||| | | || || || | | || || Sbjct 19587307 TTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCA 19587366 Query 131978 AGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAA 132037 | || |||| | ||| ||| || ||| ||| | ||| || | ||| Sbjct 19587367 CGTGACGAAGGTCTTCATTGTGATTTCGCTTGTTTACTTTATTCGCTTTTGAGAAAGAAA 19587426 Query 132038 CTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTT 132097 ||| |||| | | | ||| || | | || || ||||| || |||| || ||| Sbjct 19587427 CTTAGTGAAGAGCGTGTGAAAACTATTGTCCGTGATGCGGTTGAGATTGAGAGAGAATTT 19587486 Query 132098 ATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTAC 132157 || ||||| | ||||| |||| |||| ||||| | ||| | |||| |||| Sbjct 19587487 GTTTGTGAAGCGCTTCCTTGTGCTTTGGTTGGAATGAACGGTGAATTGATGAGTCAGTAT 19587546 Query 132158 ATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACC 132217 ||||| || ||||||||| | ||| | | ||||| | | || |||||||| Sbjct 19587547 ATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTGTGGGAAAATTTATAATGTT 19587606 Query 132218 CAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 || || || | | |||||||| | ||||||||| | || ||||| ||||| || || Sbjct 19587607 CAGAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGA 19587665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186218988971011