Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9364 118 7e-22 seq1 107 1e-18 seq28626 104 2e-17 seq28803 102 5e-17 seq4 93.3 3e-14 seq3 87.8 1e-12 seq5139 86.0 4e-12 >seq9364 Length=1264 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || ||| ||| ||||| ||||||||||||| Sbjct 511 ACCACCACGGAGACGGAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGC 570 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| |||| |||||||| |||||||||||||||||||| || | || Sbjct 571 AAGGGTCCGCCCGTCCTCCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGG 630 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| | | ||||| ||| | ||| ||| || | Sbjct 631 GATCCCTTCCTTATCTTGAATTTT-GGCCTTAACATTGTCTATGGTATCGGAACTCTCAA 689 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || ||||| || | || || |||||||| ||||| Sbjct 690 CTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 >seq1 Length=28142018 Score = 107 bits (118), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||| | ||| | || |||||| ||| || || || |||||||| | Sbjct 1586410 ACCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGC 1586469 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || ||||||||||| || ||||| ||||| | |||||||||| | || Sbjct 1586470 AAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 1586529 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| || || || || | | |||| ||| | |||||| ||| | Sbjct 1586530 AATACCTTCCTTATCCTGGATCTT-AGCCTTGACATTGTCAATGGTGTCTGAGCT---CT 1586585 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || || ||||| || || || || ||||| ||||||||| Sbjct 1586586 CCACCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCATA 1586638 >seq28626 Length=87040 Score = 104 bits (114), Expect = 2e-17 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | ||| | | ||||||||||| || |||||| || || Sbjct 42353 AAAATCTGCATTCCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATA 42412 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || ||||| | || || | | || |||||||| || || ||||| ||||| |||||| Sbjct 42413 TTATAATCCGCAAGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGC 42472 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||||| ||||| ||||| | || || | ||| | ||| || Sbjct 42473 TGATCAGGAGGAATTCCTTCCTTGTCTTGGATTTT-GGCTTTGACGTTGTCGATGGTATC 42531 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 42532 GGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 Query 33750 AGT 33752 || Sbjct 42592 GGT 42594 >seq28803 Length=52646 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || || ||| ||||||||||||||||||| Sbjct 33768 ACCACCACGGAGACGGAGCACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGC 33827 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| |||| || ||||| |||||||||| ||||||||| || | || Sbjct 33828 AAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGG 33887 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | ||||| || || ||| || | | ||||| ||| | ||| || ||| | Sbjct 33888 GATCCCTTCCTTATCTTGAATCTT-GGCCTTAACATTGTCTATGGTATC---TGAACTCT 33943 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || || || || | || || || ||||| ||||| Sbjct 33944 CAACTTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||| | || ||||| ||| || || |||||||| || | || || | | | Sbjct 38758 CGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCA 38817 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||| || || ||||| ||||| | |||||||||| | || | ||||| ||| Sbjct 38818 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTG 38877 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||| || | |||| || | || || ||| || || | || || Sbjct 38878 TCCTGTATTTT-TGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAATGTAAT 38936 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || ||||| ||||| || |||||||||||||| Sbjct 38937 GGTCTTCCCTGTCAACGTCTTCACAAAGATCTGCAT 38972 >seq4 Length=28907061 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || || ||| ||||| ||||||||||||| Sbjct 27565226 ACCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGC 27565167 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| |||| || ||||| |||||||||| ||||||||| || | || Sbjct 27565166 AAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGG 27565107 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | ||||| || || ||| || | | ||||| ||| | ||| || ||| | Sbjct 27565106 GATCCCTTCCTTATCTTGAATCTT-GGCCTTAACATTGTCTATGGTATC---TGAACTCT 27565051 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || || || | || || || ||||| ||||| Sbjct 27565050 CAACTTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | || ||||| |||||| || ||||| ||||| | Sbjct 27565682 ACCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGC 27565623 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | || ||||||||||||||||| | |||||||||| | || Sbjct 27565622 CAGGGTTCTGCCATCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGG 27565563 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || || || | | |||| ||| | |||||| |||| Sbjct 27565562 AATACCTTCTTTATCTTGTATCTT-GGCCTTGACATTGTCTATGGTGTCAGAACTCTCCA 27565504 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||||||||||||| Sbjct 27565503 CCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCATA 27565454 >seq3 Length=31061273 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| |||| ||| ||||| | || ||||| || |||||||| || Sbjct 8017633 TCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAG 8017574 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||| ||||| || | || | ||||| ||||| || || ||| | | | Sbjct 8017573 ATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGA-CGTT 8017515 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||| || || || || | || ||||| || ||||||| ||||| || Sbjct 8017514 GTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGTTAGGGTTTTCAC 8017455 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 8017454 GAAGATCTGCAT 8017443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| ||| ||||| ||||||||||| | Sbjct 12366175 ACCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGC 12366116 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || ||||| |||||||||| ||||||||| ||| || Sbjct 12366115 AAGGGTACGCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGG 12366056 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | ||||| || || ||| || | | ||||| ||| | ||| || ||| | Sbjct 12366055 GATCCCTTCCTTATCTTGAATCTT-GGCCTTAACATTGTCTATGGTATC---TGAACTCT 12366000 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || | || || ||||| | || || |||||||| ||||| Sbjct 12365999 CAACTTCGAGAGTAACGGTCTTGCCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||||||| | || | ||| || ||| || || || ||||||||||||| Sbjct 12366858 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366799 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| || ||||||||||||||||| | ||||| ||| | || Sbjct 12366798 AAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGGA 12366739 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| || ||||| || || ||| |||| ||| | ||||| ||| ||| Sbjct 12366738 ATACCCTCCTTGTCTTGTATCTTGGCCTTC-ACATTGTCAATTGTGTCTGAGCT---TTC 12366683 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || || ||||| | ||| || ||||| ||||||||| Sbjct 12366682 TACCTCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCATA 12366631 >seq5139 Length=1344 Score = 86.0 bits (94), Expect = 4e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||||||| || ||| ||| ||||| ||||||||||||| || || || | Sbjct 1312 ACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCC 1253 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || |||| || ||||| |||||||||| ||||||||| || Sbjct 1252 ATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTC 1211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328547558569920