Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq28107 168 2e-37 >seq28107 Length=123132 Score = 168 bits (186), Expect = 2e-37 Identities = 165/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 19879 TTGGATTTG-TGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TC 19936 || || ||| |||||| || || |||||||||||||| || ||| || ||||| | || Sbjct 14809 TTTGAGTTGCTGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGT-TTTCTTGATC 14867 Query 19937 TACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTC 19996 ||||| | |||||||| ||||| || |||| ||||||| | || ||||| ||||| ||| Sbjct 14868 TACCCAATAGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 14927 Query 19997 AACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTT 20056 |||| ||| | ||||| || || || ||||| ||||| ||||| ||||| ||||| | Sbjct 14928 AACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTA 14987 Query 20057 GGTGTGGCTGGTGTATTCGGTGGGTCACT 20085 ||||| |||||||||||||| || ||||| Sbjct 14988 GGTGTAGCTGGTGTATTCGGCGGCTCACT 15016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148759783527558