Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 5e-13 seq28688 84.2 6e-12 >seq6 Length=22682783 Score = 87.8 bits (96), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| | ||||||||||| ||| ||||| |||||||| | || ||| ||||| Sbjct 2047970 TTTATTATCACTTTCATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTT 2048027 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA--GCAGCA 18934 | || ||| ||||| |||||||| || || | || ||| | | || | | || Sbjct 2048028 TCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTATCCCTACTTCTGC- 2048086 Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 18994 || ||||| | ||||| |||||||| ||||||||| || ||||||| | | | | Sbjct 2048087 -GGCTATCGGTTTGCACTTTTACCCAATATGGGAAGCTGCATCCGTTGATGAGTTGTTAT 2048145 Query 18995 ACAACGGGGGACC 19007 ||||||| || || Sbjct 2048146 ACAACGGCGGTCC 2048158 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/250 (69%), Gaps = 17/250 (7%) Strand=Plus/Minus Query 18750 TAACCGTCTTTATATCGGCTGGTTTG-------GAACACTGATGATTCCGTGTCTCCTTG 18802 ||| |||| ||| || || ||||||| ||| ||||||| || | || ||| Sbjct 2115463 TAATCGTCGTTACATTGGATGGTTTGATGTTTTGAATTTTGATGATCCC-TACCTTATTG 2115405 Query 18803 -CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGG 18860 | || ||| | ||| || ||||| || ||||||||||| ||| ||||| |||||||| Sbjct 2115404 ACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTTTAGTAGATATTGATGG 2115346 Query 18861 CATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGT 18920 | || ||| ||||| | || ||| ||||| |||||||| || || | || ||| | Sbjct 2115345 --TTCGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCAT 2115288 Query 18921 CGTTCCGAGCAGC----AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATT 18976 |||| ||| | || ||||| | ||||| ||||| || ||||||||| | Sbjct 2115287 TATTCCTAGCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCAT 2115228 Query 18977 CACTTGATGA 18986 | ||||||| Sbjct 2115227 CTGTTGATGA 2115218 >seq28688 Length=72243 Score = 84.2 bits (92), Expect = 6e-12 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || |||||||||||||| || |||||||| || Sbjct 1959 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 2018 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||| ||| | | ||| | || ||| | ||| || ||||| || || |||||||| | Sbjct 2019 ATGA-TCCCTACATTATTGACCGCAACT-TCTGTATTTATTATCGCTTTTATTGCTGCCC 2076 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAG 18870 ||| ||||| |||||| | || || ||| Sbjct 2077 CTCTAGTAGATATTGATTGTATTCGTGAG 2105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141083344978758