Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 140 3e-28 seq28803 125 6e-24 seq3 122 8e-23 seq9364 113 4e-20 seq1 109 5e-19 seq28674 96.9 3e-15 seq5139 96.9 3e-15 seq28613 89.7 5e-13 >seq4 Length=28907061 Score = 140 bits (154), Expect = 3e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||||||||||||| | || || |||||||| || ||||| Sbjct 27565873 TCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAA 27565814 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||| |||| |||| || |||||||||| ||||| ||||| | | Sbjct 27565813 ATCAACCTTTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGTATCTTAGCCTTCACATTG 27565754 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| || || || ||||| || | ||||||| Sbjct 27565753 TCAATTGTGTCTGAGCTC---TCAACCTCCAAAGTTATTGTCTTACCAGTAAGAGTTTTC 27565697 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 27565696 ACAAAAATCTGCAT 27565683 Score = 109 bits (120), Expect = 5e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | ||| ||||||||| |||||||||||||| Sbjct 27565225 CCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCA 27565166 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| ||| |||| ||||||||||| || ||||| |||| ||||||||||||| Sbjct 27565165 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCG 27565111 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | |||||| | || | ||| |||||| ||||||||||| || || Sbjct 27566138 TCCACCACGAAGGCGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 27566079 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| | | || |||| ||||| || ||||| ||||||| |||||| || | || Sbjct 27566078 AAGGGTCCTTCCATCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 27566019 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| || ||| ||| | | | | | ||| || ||| || Sbjct 27566018 GATTCCCTCCTTGTCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTAC 27565959 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || |||||||| |||||||| |||||||| Sbjct 27565958 CTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 >seq28803 Length=52646 Score = 125 bits (138), Expect = 6e-24 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| || |||||||| | || | |||||||| || ||||| Sbjct 13151 TCCTTCTGGATGTTGTAATCAGCTAAGGTTCGGCCATCTACGAGCTGCTTTCCAGCAAAA 13092 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||| ||||| |||| || || ||||||| ||||| ||||| | | Sbjct 13091 ATCAACCTTTGCTGATCCGAGGGAATGCCCTTCTTGTCCTGTATCTTAGCCTTCACATTG 13032 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | |||||| |||| || ||||||| || ||||| ||||| || | |||||| Sbjct 13031 TCAATCGTGTCTGAGCTC---TCAACCTCCAAAGTTATCGTCTTACCAGTAAGAGTTTTG 12975 Query 35723 ACAAATATCTGCAT 35736 || || |||||||| Sbjct 12974 ACGAAAATCTGCAT 12961 Score = 113 bits (124), Expect = 4e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||||||| |||||| | || || |||||||| || ||||| Sbjct 33349 TCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAG 33408 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||||| | || | | ||||||||| ||||| ||| | | | Sbjct 33409 ATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTAACATTG 33468 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| || || || || || || | ||| ||| Sbjct 33469 TCAATAGTGTCTGAGCTC---TCAACCTCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTC 33525 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 33526 ACAAAAATCTGCAT 33539 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | || ||||||||| |||||||||||||| Sbjct 33769 CCACCACGGAGACGGAGCACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCA 33828 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| ||| |||| ||||||||||| || ||||| |||| ||||||||||||| Sbjct 33829 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCG 33883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||| | | |||||||| | | |||||| | ||| | ||| ||||| |||||||||| Sbjct 32525 CTTAAATCCCACCACGAAGGCGCAACACAAGATGAAGAGTAGATTCCTTCTGAATGTTGT 32584 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | || || | ||| | | || |||| ||||| || ||||| ||||||| |||||| | Sbjct 32585 AGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGAT 32644 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | || | | ||||||||| || ||| ||| | | | | | || || Sbjct 32645 CTGGTGGGATTCCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCGATTGTATCAGAAC 32704 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| ||||||| || || || || || ||||| || |||||||| |||||||| Sbjct 32705 TTTCTACCTCCAAAGTAATGGTCTTCCCTGTCAAGGTCTTCACAAAGATCTGCAT 32759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || | ||| |||||| ||||||||||| || || Sbjct 38746 CCACCACGAAGGCGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 38805 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| | | || |||| ||||| || ||||| ||||||| |||||| || | || Sbjct 38806 AGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 38865 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| || ||| ||| | | | | | || || ||| ||| Sbjct 38866 ATTCCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACC 38925 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || ||||| || |||||||| |||||||| Sbjct 38926 TCCAATGTAATGGTCTTCCCTGTCAACGTCTTCACAAAGATCTGCAT 38972 >seq3 Length=31061273 Score = 122 bits (134), Expect = 8e-23 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||||||||||||| | || ||||||||||| || ||||| Sbjct 12366822 TCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAA 12366763 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||||| | ||||| | ||||||||| ||||| ||||| | | Sbjct 12366762 ATCAACCTTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTG 12366703 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| ||| ||||||| || || || || || || | || || Sbjct 12366702 TCAATTGTGTCTGAGCT---TTCTACCTCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTA 12366646 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 12366645 ACAAAAATCTGCAT 12366632 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| || | ||| | || ||||| || ||||||||||||||| Sbjct 12366630 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366571 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || ||||||||||| || ||||| |||| || |||||||| | ||| Sbjct 12366570 AAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 12366511 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||||||| ||||| ||| | | | | | || || |||| || Sbjct 12366510 ATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTC---TCA 12366454 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || |||||||| || || | || || ||||| |||||||| Sbjct 12366453 ACCTCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||| ||||| ||||| || || | || || |||||||| || ||||| Sbjct 12367279 CTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTTCCAGCAAA 12367220 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| |||||||| | |||| | || |||||| ||||| ||||| | | Sbjct 12367219 TATCAACCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGTATCTTGGTCTTCACATT 12367160 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||||| || || || || || || | ||| || Sbjct 12367159 GTCAATAGTGTCTGAGCTC---TCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTT 12367103 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 12367102 CACGAAAATCTGCAT 12367088 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | || ||||||||| ||||||||||| || Sbjct 12366174 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 12366115 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| ||| | || ||||||||||| || ||||| |||| ||||||||||| || || Sbjct 12366114 AGGGTACGCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGG 12366056 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || | | ||| || | ||| | ||| |||||| ||||||||||| || || Sbjct 12367543 TCCACCGCGAAGGCGCAAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 12367484 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || | | || |||| ||||| || ||||| ||||||| |||||| || | || Sbjct 12367483 AAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 12367424 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| || ||| ||||| | | | ||||| ||| || Sbjct 12367423 GATTCCCTCCTTATCCTGTATTTTTGCCTTCACGTTATCAATTGTGTCTGAACTTTCTAC 12367364 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || |||| || |||||||| || ||||| Sbjct 12367363 CTCCAAGGTAATGGTCTTTCCGGTCAGCGTCTTCACAAAGATTTGCAT 12367316 >seq9364 Length=1264 Score = 113 bits (124), Expect = 4e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||||||| |||||| | || || |||||||| || ||||| Sbjct 92 TCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAG 151 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||||| | || | | |||||||||| ||||| |||| | | Sbjct 152 ATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTG 211 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| || || || || || || | || ||| Sbjct 212 TCAATAGTGTCTGAGCTC---TCAACCTCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTC 268 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 269 ACAAAAATCTGCAT 282 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || ||||||||| |||||||||||||| Sbjct 512 CCACCACGGAGACGGAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCA 571 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| ||| |||| |||||||| || || ||||| ||||| ||||||||||||| Sbjct 572 AGGGTCCGCCCGTCCTCCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCG 626 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| || | ||| | || || || || ||||||||||| || Sbjct 284 CCACCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCT 343 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| | | || || |||||||| || ||||| ||||||| |||||||| | || Sbjct 344 AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 403 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||| ||||| ||||| ||| | | | | | ||||| ||| ||| Sbjct 404 ATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTC---TCC 460 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | ||| |||||||| || ||||| Sbjct 461 ACCTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 510 >seq1 Length=28142018 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || | || |||||| || || |||||||||||| Sbjct 1586933 CCACCACGAAGACGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCC 1586992 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || |||||||| || ||||| ||||||| ||||||||| | || Sbjct 1586993 AAAGTACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1587052 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||||||| |||||| ||| | |||| | | ||||| ||| ||| Sbjct 1587053 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCT---TTC 1587108 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | ||| || || || |||||||| Sbjct 1587109 AACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCAT 1587159 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || |||||||| || | ||| | | || |||| || || || ||||| Sbjct 1586446 CTCCTTCTGGATATTGTAATCCGCAAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAA 1586505 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| || | |||| | ||||| ||| |||||| ||| | | | Sbjct 1586506 GATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACATT 1586565 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||||| || || || ||||| |||||||| || Sbjct 1586566 GTCAATGGTGTCTGAGCTC---TCCACCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTT 1586622 Query 35722 CACAAATATCTGCAT 35736 |||||||||||||| Sbjct 1586623 GACAAATATCTGCAT 1586637 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || || | ||| | | || |||| ||| || || || || Sbjct 1586218 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGTTTCCCTGCGAA 1586277 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 |||| || |||||| || | || | | ||||| ||| ||| ||| | ||||| | Sbjct 1586278 GATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCC-TGAATTTTGGCCTTCACAT 1586336 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | || || |||| |||||||||| || || || ||||| ||||| || | Sbjct 1586337 TATCAATGGTATCTGAGCTC---TCCACCTCCAAGGTTATGGTCTTACCAGTCAAGGTCT 1586393 Query 35721 TCACAAATATCTGCAT 35736 | ||||| |||||||| Sbjct 1586394 TGACAAAAATCTGCAT 1586409 >seq28674 Length=75340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||||||| | |||||||| | |||| ||| || || || || ||||| | Sbjct 21044 TTCCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAG 20985 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | |||| | || |||| ||||| || ||||| ||||| || || || || | || Sbjct 20984 CAAGAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAG 20925 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 ||| | || || || |||||| ||||| |||| | | ||||| ||||| Sbjct 20924 GAATTCCTTCTTTATCTTGAATCTTTGCCTTCA-CGTTGTCGATTGTGTCAGAAGATTCG 20866 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||| ||||| || || | ||||| || || || ||||| Sbjct 20865 ACTTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 >seq5139 Length=1344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||||||||| |||||||||||||| | ||| ||| | || || Sbjct 1306 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCATCCTC 1247 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 ||||||||| || ||||| |||| ||||||||||||| Sbjct 1246 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCG 1209 >seq28613 Length=6376 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||||||||||| ||||| || | || || | || ||| Sbjct 5583 ACCAAGTGAAGCGTTGATTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCC 5524 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 ||||||||||| ||||| ||||||| ||||||||| | ||| | | ||||||||| Sbjct 5523 AGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 5467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450573550739080