Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 seq38608 154 2e-32 seq28107 141 1e-28 seq7 93.3 5e-14 seq32521 89.7 6e-13 seq2 84.2 3e-11 seq38643 82.4 9e-11 >seq1 Length=28142018 Score = 161 bits (178), Expect = 1e-34 Identities = 249/353 (71%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 159475 GGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 159534 |||||| | || || || || ||| | || ||||| || || || | || |||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 159535 TACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGT 159594 || | |||||| ||| || | || || || ||||| || |||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 159595 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAA 159654 |||||| | | |||| ||||||||| | | || | || || | ||||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 159655 CTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATG 159714 | || || || ||| | ||||||||||| |||||||| |||| | |||||||||||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 159715 CTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTT 159773 |||| ||||||||| ||||| | ||| ||| | || ||||| ||||| || | || Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCT-GTTCAATTGCGGCCTTATAATGCAATCACATT 23237799 Query 159774 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTC 159826 ||| ||||| | || ||||||||| |||||||| || ||||||| |||| Sbjct 23237800 CTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq38608 Length=401930 Score = 154 bits (170), Expect = 2e-32 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 160214 TTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGA 160273 ||||||| || || ||||| ||| || || | ||||| ||||||||||||||||||| Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 160274 CCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTG 160333 | ||||||||||| || || || || || ||||| |||||||||||||||| || | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 160334 ATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 |||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 348742 >seq28107 Length=123132 Score = 141 bits (156), Expect = 1e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 158059 TGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGG 158118 ||| |||||||| ||||| || || || || | |||||| ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 158119 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 158178 ||| || || || |||| ||||||||| || |||||||||||||| |||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 158179 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 158238 |||||| || || || || || || |||||||| ||||| | ||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 158239 GGTATTCGGTGGATCTCT 158256 |||||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq7 Length=30551617 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 ||||| |||| || ||||| | ||||||||||| || ||||| |||||||||||| Sbjct 3659803 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGT 3659744 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 || || ||| |||||||||| || |||| || |||| || || ||| ||| Sbjct 3659743 GCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCA 3659684 Query 158964 TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACT 159023 | | || || | ||| || ||||| ||| | || || ||||| | ||||| ||| Sbjct 3659683 TATCTCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACT 3659624 Query 159024 TCTGATTGTGT 159034 || |||||||| Sbjct 3659623 TCAGATTGTGT 3659613 >seq32521 Length=1850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 160210 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTT 160269 || || ||||| || || ||||| ||| || || ||||| ||||||||||||||| Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 160270 GAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGA 160321 ||||| ||||||||||| || || || || || ||||| ||||||| |||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGA 736 >seq2 Length=32560536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 |||||||| ||| ||| || || | ||| |||| || || || || | |||||| Sbjct 25898676 TACATTCTTGACCATGCTGAGGAAGTTGGAATTGAACTTCCTTACTCATGCAGAGCTGGT 25898735 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 | |||||||| |||||||||||| |||| | || | |||| | || ||| || Sbjct 25898736 TCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAAGATGGTTCT 25898795 Query 158964 TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACT 159023 || | |||||||| ||||||| || ||| | | ||||| ||||| ||| || || Sbjct 25898796 TTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCTTTCCCTACA 25898855 Query 159024 TCTGAT 159029 |||||| Sbjct 25898856 TCTGAT 25898861 >seq38643 Length=305821 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 159717 ACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCT 159775 ||||||||||||| ||||||| |||| | | | || ||||| ||||| || || |||| Sbjct 248816 ACGGCAATTTGAACTTGCTCGGTCTATTCAAT-TGCGGCCTTATAATGCAATCGCATTCT 248874 Query 159776 CTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTG 159822 | ||| | |||||||||||||| |||||||| || |||||||| Sbjct 248875 CCGGTTCAATTGCTGTTTTTGTTTATGTATTCCTGATTCATCCACTG 248921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572744285497200