Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq28107 136 4e-27 seq38608 118 1e-21 seq7 114 1e-20 seq4 107 2e-18 seq29563 87.8 2e-12 >seq28107 Length=123132 Score = 136 bits (150), Expect = 4e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160343 TGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGG 160402 ||| |||||||| ||||| || || || || ||| || ||| | | || || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 160403 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 160462 ||| || || || |||| ||||||||| || |||||||||||||| |||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 160463 TGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 160522 |||||| || || || || ||||| |||||||||||||| ||||| | || || ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 160523 GGTATTCGGTGGATC 160537 |||||||| || || Sbjct 14999 TGTATTCGGCGGCTC 15013 >seq38608 Length=401930 Score = 118 bits (130), Expect = 1e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 162523 TTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAA 162582 ||||||| || || ||||| ||| || ||| | ||||| ||||||||||| ||||| | Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 162583 CGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCG 162642 | |||||||| || || ||||| | || ||||| | ||||| ||| | || || | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 162643 ACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTT 162702 | || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||| Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 348740 Query 162703 AAT 162705 ||| Sbjct 348739 AAT 348737 >seq7 Length=30551617 Score = 114 bits (126), Expect = 1e-20 Identities = 148/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| |||||||||||||| | ||||||||||| || ||||| |||||||||||| Sbjct 3659803 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGT 3659744 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| ||||||| || || || |||| ||| | ||||| |||||||| || Sbjct 3659743 GCGTGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCA 3659684 Query 161246 TTCTTGGATGATGACCAGAT---TGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 | | || || | || || |||| || || | | || |||||||| ||||| Sbjct 3659683 TATCTCGACGACGGTCAAATAAATGAA---GGTTTTGTGCTAACCTGTGTTGCCTATCCA 3659627 Query 161303 ACTAGCGATTGTGTGATTCAAAC 161325 ||| |||||||| ||||| || Sbjct 3659626 ACTTCAGATTGTGTTATTCACAC 3659604 >seq4 Length=28907061 Score = 107 bits (118), Expect = 2e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| |||||||||||||| | || |||||||| | ||||| || || ||||| Sbjct 20821550 TACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGCCGCGCTGGA 20821491 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| | ||||| || || ||| |||| ||| |||| || |||||||| || Sbjct 20821490 GCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCT 20821431 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||||||||||| | || || | || || | | || |||||| | ||||| ||| Sbjct 20821430 TTCTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCCTATCCAACT 20821371 Query 161306 AGCGATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGA 161350 || ||| ||| ||||| | |||| ||||||| || |||||| Sbjct 20821370 GCAGACGTTGTAATTGAAACTCA-CAAGGAAGGAGAA-CTTTACTGA 20821326 >seq29563 Length=4854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || || |||| ||||||||| || ||||| |||||||| |||| ||| ||||||| || Sbjct 4304 TTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTTCAG 4363 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATG 160508 | || || ||||| ||||||||||| || |||||| Sbjct 4364 GTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559230885116200