Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq28107 132 6e-26 seq38608 129 7e-25 seq1 120 4e-22 >seq28107 Length=123132 Score = 132 bits (146), Expect = 6e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 181364 TGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGG 181423 ||||||||| || ||||| || ||||| || ||| || ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 181424 TCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCT 181483 ||| || || || || | ||||| || || ||||||||||| ||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 181484 TGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGG 181543 ||| || || || ||||| || ||||| |||||||| || ||||||| ||||| || || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 181544 TGTATTTGGTGGTTCACT 181561 |||||| || || ||||| Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq38608 Length=401930 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 183193 ATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCG 183252 || ||||||| ||||| || || |||||| || | ||||| ||||||||||| || | Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 183253 AGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTG 183312 |||| |||||||| || || || || | || ||||| | ||||||||| |||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 183313 CCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCAC 183372 ||||| || ||||||||| | || |||||||| || |||||||| | || ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 183373 T 183373 | Sbjct 348742 T 348742 >seq1 Length=28142018 Score = 120 bits (132), Expect = 4e-22 Identities = 235/345 (68%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 182457 GGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCC 182516 |||||| | || || || | ||||| || ||||| || || || | || |||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 182517 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGT 182576 ||| | |||||| |||||| | || || || ||||| || |||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 182577 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 182636 |||||| | | |||| ||||||||| | | || | |||| | | ||||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 182637 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 182696 | || || | |||| ||| || ||||| |||||||| |||| | || ||||| ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 182697 CTTAGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCTTACAATGCGATTGCTTT 182755 | | ||||||||||||||| | ||| || | | | ||||| ||||| || | || Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTG-TTCAATTGCGGCCTTATAATGCAATCACATT 23237799 Query 182756 TTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCC 182800 || ||||| | || ||| || || ||| ||||| || ||||| Sbjct 23237800 CTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614317582101280