Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 3e-18
seq38608 105 1e-17
seq6 96.9 5e-15
>seq1
Length=28142018
Score = 107 bits (118), Expect = 3e-18
Identities = 235/352 (67%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 175947 GGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCC 176006
|| ||| | || || || || ||||| || ||||| || ||||| | || ||||
Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560
Query 176007 TATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGT 176066
||| | || ||| |||||| | || ||||| ||||| ||||||| | || | | |
Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620
Query 176067 CATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAA 176126
|||||| | | |||| ||||||||| || | || | || || | | ||| |||
Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680
Query 176127 CTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATG 176186
| || || | ||| | ||||||||||| |||||||| |||| | || || || |||
Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740
Query 176187 CTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTC 176246
| ||||| |||||||| || || || | || || || || || || |||||
Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCACATTC 23237800
Query 176247 AGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTC 176298
||||| | | ||| ||||| ||| || || | || |||| |||||
Sbjct 23237801 TCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852
>seq38608
Length=401930
Score = 105 bits (116), Expect = 1e-17
Identities = 130/178 (73%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 176683 ATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTG 176742
|| ||||||| ||||| || || ||||| || | ||||| ||||||||||| ||||
Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863
Query 176743 AAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTG 176802
| ||||||||||| || || || || | |||||||| | | || |||||||| ||
Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803
Query 176803 TGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860
||||| || ||||| || ||||||| || || |||||||| | || |||||
Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 348745
>seq6
Length=22682783
Score = 96.9 bits (106), Expect = 5e-15
Identities = 165/236 (70%), Gaps = 15/236 (6%)
Strand=Plus/Minus
Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAA-------TGATTCCTACATTGTTAGC 174547
||||||| |||| | || ||||| | |||| | | |||| ||||| || || |
Sbjct 2115462 AATCGTCGTTACATTGGATGGTTTGATGTTTTGAATTTTGATGATCCCTACCTTATTGAC 2115403
Query 174548 CGCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAA 174606
||||||| | ||| || |||||||||||| | | ||| || ||| || || || ||
Sbjct 2115402 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTTTAGTAGATATTGATGG-- 2115346
Query 174607 TCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTG 174666
| ||||| | || |||| || || | || |||||||| || || | |||||| ||
Sbjct 2115345 TTCGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTA 2115286
Query 174667 TTCCTAG----TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGC 174718
||||||| ||| || |||||| | ||||| ||||| || |||||||| ||
Sbjct 2115285 TTCCTAGCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGC 2115230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729573293989880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |