Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq38608 105 1e-17 seq6 96.9 5e-15 >seq1 Length=28142018 Score = 107 bits (118), Expect = 3e-18 Identities = 235/352 (67%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 175947 GGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCC 176006 || ||| | || || || || ||||| || ||||| || ||||| | || |||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 176007 TATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGT 176066 ||| | || ||| |||||| | || ||||| ||||| ||||||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 176067 CATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAA 176126 |||||| | | |||| ||||||||| || | || | || || | | ||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 176127 CTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATG 176186 | || || | ||| | ||||||||||| |||||||| |||| | || || || ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 176187 CTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTC 176246 | ||||| |||||||| || || || | || || || || || || ||||| Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCACATTC 23237800 Query 176247 AGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTC 176298 ||||| | | ||| ||||| ||| || || | || |||| ||||| Sbjct 23237801 TCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACAAGGTC 23237852 >seq38608 Length=401930 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 176683 ATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTG 176742 || ||||||| ||||| || || ||||| || | ||||| ||||||||||| |||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 176743 AAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTG 176802 | ||||||||||| || || || || | |||||||| | | || |||||||| || Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 176803 TGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 348745 >seq6 Length=22682783 Score = 96.9 bits (106), Expect = 5e-15 Identities = 165/236 (70%), Gaps = 15/236 (6%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAA-------TGATTCCTACATTGTTAGC 174547 ||||||| |||| | || ||||| | |||| | | |||| ||||| || || | Sbjct 2115462 AATCGTCGTTACATTGGATGGTTTGATGTTTTGAATTTTGATGATCCCTACCTTATTGAC 2115403 Query 174548 CGCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAA 174606 ||||||| | ||| || |||||||||||| | | ||| || ||| || || || || Sbjct 2115402 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTTTAGTAGATATTGATGG-- 2115346 Query 174607 TCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTG 174666 | ||||| | || |||| || || | || |||||||| || || | |||||| || Sbjct 2115345 TTCGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTA 2115286 Query 174667 TTCCTAG----TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGC 174718 ||||||| ||| || |||||| | ||||| ||||| || |||||||| || Sbjct 2115285 TTCCTAGCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGC 2115230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729573293989880