Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq28107 132 6e-26 seq1 120 4e-22 seq38608 100 3e-16 seq2 91.5 2e-13 >seq28107 Length=123132 Score = 132 bits (146), Expect = 6e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 178232 TGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGG 178291 ||| ||||| || ||||| || ||||| || ||||| ||| || |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 178292 TCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCT 178351 ||| || ||||| || | ||||| || || ||||||||||| ||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 178352 TGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGG 178411 ||| || || || || || || ||||| ||||| || || ||||||| ||||| || || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 178412 TGTATTCGGTGGTTCACT 178429 ||||||||| || ||||| Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq1 Length=28142018 Score = 120 bits (132), Expect = 4e-22 Identities = 237/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 179319 GGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 179378 |||||| | || || || | ||||| || ||||| || || || | || |||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 179379 TATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGT 179438 ||| | || ||| |||||| | || || || ||||| || |||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 179439 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 179498 |||||| | | |||| ||||||||| | | || | |||| | | ||||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 179499 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 179558 | || || | |||| ||| || ||||| |||||||| |||| | || ||||| ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 179559 CTTAGGCAATTTGAACTTGCTCGCCTGATTGGTATCA-----GACCTTACAATGCGATTG 179613 | | ||||||||||||||| |||| || ||| | ||||| ||||| || Sbjct 23237741 TTACGTCAATTTGAACTTGCT----TGATCTGT-TCAATTGCGGCCTTATAATGCAATCA 23237795 Query 179614 CTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCC 179662 | || || ||||| | || ||| || || ||| ||||| || ||||| Sbjct 23237796 CATTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 >seq38608 Length=401930 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 180058 TTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGA 180117 ||||||| || || ||||| ||| || ||| | ||||| |||||||| || ||||||| Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 180118 CCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTG 180177 | ||||||||||| || ||||| | || ||||| | ||||| ||| |||| | | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 180178 ATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 |||| || ||||| | ||||||| || || ||||| ||| | || || || Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 348745 >seq2 Length=32560536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 |||||| || || |||||| |||||| |||| || | || | |||||| || Sbjct 25898667 GATGATGTTTACATTCTTGACCATGCTGAGGAAGTTGGAATTGAACTTCCTTACTCATGC 25898726 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | |||||| ||||||| ||||||||||| ||| | | | |||| |||| ||||| Sbjct 25898727 AGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAA 25898786 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| ||||| || |||||||| || |||||| |||| |||| ||||| || || Sbjct 25898787 GATGGTTCTTTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCT 25898846 Query 176517 TATCCTAC 176524 | ||||| Sbjct 25898847 TTCCCTAC 25898854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605713783988880