Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq28107 141 1e-28 seq38608 136 5e-27 seq28817 98.7 1e-15 seq32521 84.2 3e-11 >seq28107 Length=123132 Score = 141 bits (156), Expect = 1e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 179244 TGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 179303 ||||||||| || || || || || ||||| | |||||| ||| | |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 179304 TCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 179363 ||| || || || |||| ||||||||| || |||||||||||||| |||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 179364 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 179423 |||||| || || || || || || |||||||| ||||| | ||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 179424 GGTATTCGGTGGATCTCT 179441 |||||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq38608 Length=401930 Score = 136 bits (150), Expect = 5e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 180856 TTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGA 180915 ||||||| || || ||||| |||||| ||| | ||||| ||||||||||| || |||| Sbjct 348919 TTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGA 348860 Query 180916 CGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCG 180975 | ||||||||||| || || || || || ||||| | ||||| ||| |||| || | Sbjct 348859 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 348800 Query 180976 ATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| || || |||||| | || |||||||| || ||||||||| | || ||||| Sbjct 348799 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 348745 >seq28817 Length=50997 Score = 98.7 bits (108), Expect = 1e-15 Identities = 100/130 (77%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 177348 CCAGATGGAACTGAAGAGTCCTTCCCTTGTGAAGACGATCAGTACATCCTCGACGCCGCT 177407 |||||||||||| |||| | | ||||| ||| ||| ||||||| || |||| || Sbjct 35468 CCAGATGGAACTAAAGAAT---TTACTTGTCCAGATGATGAGTACATTCTTGACGTAGCA 35524 Query 177408 GAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGTGCTTGTTCATCCTGTGCT 177467 |||||| ||| ||||| || |||||||||| | ||||||||||| || || |||||| Sbjct 35525 GAAGAACAAGGCGTTGACCTTCCTTACTCATGCAGGGCTGGTGCTTGCTCTTCATGTGCT 35584 Query 177468 GGTAAACTTG 177477 || ||| ||| Sbjct 35585 GGAAAAGTTG 35594 >seq32521 Length=1850 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 180852 AACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTC 180911 || || ||||| || || ||||| |||||| ||| ||||| ||||||||||| || Sbjct 847 AAACTACGTGCCTATGACTTCGTTTCTCAAGAAATCCACGCAGCGGAAGATCCTGAATTT 788 Query 180912 GAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGG 180962 ||||| ||||||||||| || || || || || ||||| | ||||| ||| Sbjct 787 GAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610031675234880