Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq28226 192 8e-44 seq2 190 3e-43 seq3 120 4e-22 >seq28226 Length=90112 Score = 192 bits (212), Expect = 8e-44 Identities = 428/636 (67%), Gaps = 10/636 (2%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || ||||| |||||||| ||||| ||||| |||||||| || | | || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| ||||||| |||| | | | || | || | | Sbjct 35026 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAA 34967 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA- 39503 ||| ||||| |||||||| || || || |||||| |||| ||||||||| | | Sbjct 34966 CAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAA 34907 Query 39504 -GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | || || || || || | ||| || | || || || || || || | Sbjct 34906 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACA 34849 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || | | || ||| |||||| || || | ||| | | | || || ||||| Sbjct 34848 ATTGTCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGCA 34789 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || ||||| || || || || | ||| | || || ||||| || | |||||| Sbjct 34788 AAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGGC 34729 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 |||| |||||| ||||| |||||||| || ||| ||| |||||| || || || ||| Sbjct 34728 ATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATACCT 34669 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCAC 39799 || || ||||| ||||| | || || || | || | | |||| || ||||| Sbjct 34668 TCAACACAAGCAAAAGCAACGA-TC-CTTTCAGCAAAT-GAATCAGATGAATCGATCCAT 34612 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 ||| ||||||||||||||||| | | |||||| || || || || || | ||| | | Sbjct 34611 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAAA 34552 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 || || ||| || ||| | | ||| || || || || ||||||||||| || ||| Sbjct 34551 CGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGAA 34492 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 || || || || ||||| ||||| |||||||| ||| Sbjct 34491 TGAATATTCTCGATCGCAATCTGGAATCCGTAGAAA 34456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 ||| ||||| || || | || ||| ||||||| |||| || || | || || Sbjct 34280 AGCAGCAAAGAAGGCAAGAACGTGTGAGATAAAATGGCGTTCACCGTCGGTTAGGTTGTT 34221 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||||| || ||||| |||| ||| |||||||| || ||||| || || || ||||| Sbjct 34220 CCAGTGATGAGGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCTGC 34161 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 ||||||||||| | ||| || | | | ||||| ||||| || ||| Sbjct 34160 TTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 34115 >seq2 Length=32560536 Score = 190 bits (210), Expect = 3e-43 Identities = 430/645 (67%), Gaps = 6/645 (1%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || || |||||||| ||||| ||||| |||||||| || | | || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| ||||||| ||||| ||||||| |||| | | || | || | Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||||| |||||||| || || || |||||| ||||| |||||||| | | Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || || || || | ||| ||| | || || || || || || | || Sbjct 19587510 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAAT 19587451 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | | || ||| ||||| || | ||| | | | | ||| || ||||| Sbjct 19587450 AGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGAA 19587391 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||||| || || || || | ||| | ||||| ||||| || | |||||||| Sbjct 19587390 ATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 19587331 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || |||||| ||||| ||||| || || ||| |||| ||||||||| || || ||||| Sbjct 19587330 TAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTC 19587271 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTT 39801 || ||||| ||||| | ||| || | | || |||| || ||||| || Sbjct 19587270 AACACAAGCAAAAGCAACGATTCTTTCAGCAAA---TGAATCAGATGAATCGATCCATTT 19587214 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||||||||||||| | ||| || || || || || |||| ||| | | Sbjct 19587213 CATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAACG 19587154 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || || ||| | ||| || | ||| || || || || ||||||||||| || ||||| Sbjct 19587153 ATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATG 19587094 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 || ||||| ||||| ||||| || ||||| ||| | |||||| Sbjct 19587093 AATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCACGTGCTTC 19587049 >seq3 Length=31061273 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||||||||| | || | |||||||| ||| | || | || ||| |||| |||||| Sbjct 3456869 TCCTCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACC 3456810 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | ||||||||||| ||| ||||| || || || || ||| || ||| Sbjct 3456809 ATTAGAAGTCCCATTTGTTCCGCGAATGTAACTGCCATAGGCACGTATGTTATGAACAGA 3456750 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| |||| || | |||||| |||||||| || || || Sbjct 3456749 AACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCGTAAAT 3456690 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 ||||| || ||||| ||| |||| Sbjct 3456689 CCCCTCAATACTATCCTCTTTCAT 3456666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686573494055640