Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq28226 246 2e-60 seq2 208 6e-49 >seq28226 Length=90112 Score = 246 bits (272), Expect = 2e-60 Identities = 457/663 (69%), Gaps = 11/663 (2%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||||| || |||| || || ||| || || || || ||||| || || |||| Sbjct 34428 AAGAAGTTCAAGTATCAGAGGCGCGTGCTTTCTACGGATTCCAGATTGCGATCGAGAATA 34487 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 ||||||| || ||||| ||||| |||| || || || ||| | ||| |||||| Sbjct 34488 TTCATTCTGAGATGTATAGTCTCTTGATTGAAACTTATATCCATGATTCTGTTGAGAAGA 34547 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 |||| |||||| | ||||| || || | ||| |||| | | ||||| || ||||| Sbjct 34548 ATCGTTTGTTTCACGCGATTGAGACTATTCCTTGTATTACAAAGAAAGCTGATTGGGCTA 34607 Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | |||||||| ||||| |||||| |||| ||| | | || || ||||| ||| | Sbjct 34608 TGAAATGGATCGATTCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTG 34667 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCG-GCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 |||| || || || || ||| |||| | || || |||||| | || ||||| ||||| Sbjct 34668 AAGGTATATTTTTCTCTGGA-AGTTTCTGTGCAATTTTTTGGCTTAAAAAACGTGGTTTA 34726 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 |||||||| || || |||||||||||| | || || || ||||| | ||||||||| Sbjct 34727 ATGCCTGGTTTAACTTTTTCAAATGAGCTTATTTCACGCGACGAAGGACTTCATTGCGAT 34786 Query 44273 TTTGCTTGCTTG-TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA-CAATTA 44330 ||||| || ||| || || | | | |||| |||| | | | |||| | | Sbjct 34787 TTTGCCTGTTTGATTTATTCGCTTTTGAGGA----ATAAAC--TGAGTGAAGAGCGTGTG 34840 Query 44331 CAGA-TATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCT 44389 ||| ||||| || || || |||| || |||||| | ||| | ||| Sbjct 34841 AAGACAATTGTGCGTGACGCGGTTGAGATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCT 34900 Query 44390 GTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGAT 44449 ||| | |||||||||| |||||||| || |||||||| | |||| ||| Sbjct 34901 TGCGCTTTGGTTGGAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGAT 34960 Query 44450 CGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTT 44509 | || | | || || ||||| || ||| |||| ||| || || || ||||||| Sbjct 34961 AGGTTGTTGTGTGAGCTTGGTTGTGAGAAAATTTATAATGTTCAGAATCCTTTTGATTGG 35020 Query 44510 ATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATAT 44569 ||||| |||||| | | || ||||| ||||||||||| || |||||||| |||||| Sbjct 35021 ATGGATTTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAATAT 35080 Query 44570 CAG 44572 ||| Sbjct 35081 CAG 35083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | | || ||| ||||||||||||||||| | || ||||| | Sbjct 34117 TGTTCCCAATTCAATACCCTAAAATCTGGGAAATGTACAAAAAAGCAGAAGCTTCATTCT 34176 Query 43767 GGACAGCAGAAGAAGTTGATTT 43788 |||| || |||||||| ||||| Sbjct 34177 GGACCGCCGAAGAAGTCGATTT 34198 >seq2 Length=32560536 Score = 208 bits (230), Expect = 6e-49 Identities = 441/649 (68%), Gaps = 17/649 (3%) Strand=Plus/Plus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 |||||||| ||| || || || || || || || |||||||||||||| || ||||| Sbjct 19587049 GAAGCACGTGCTTTCTACGGTTTCCAGATCGCGATCGAAAATATTCATTCTGAGATGTAT 19587108 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 ||||| |||| || || || ||||| ||| |||||| |||| |||||| |||| Sbjct 19587109 AGTCTCTTGATTGAAACTTATATCAATGATTCTATTGAGAAGAATCGTTTGTTTCATGCA 19587168 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 || || || | || || | ||||| || ||||| | |||||||| ||||| Sbjct 19587169 ATTGAGACGATTCCGTGTATCGCGAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA 19587228 Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 |||||| |||| ||| || | || || ||||| ||| ||||| || || ||||| Sbjct 19587229 TCTGATTCATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTTTCT 19587288 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 ||| ||| || || || ||| | || ||||| ||||| |||||||| || || ||| Sbjct 19587289 GGAAGTTTTTGTGCAATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTT 19587348 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT-GTTACT 44289 ||||| ||| | || ||||| ||||| | ||||| ||||| ||||| || || | Sbjct 19587349 TCAAACGAGCTTATTTCACGTGACGAAGGTCTTCATTGTGATTTCGCTTGTTTACTTTAT 19587408 Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTA-AGACAATTACAGATATTGTTGTAGAGG 44348 | | | | |||| | | ||| || | || | | | |||||| || | Sbjct 19587409 TCGCT---TTTGAGA--AAGAAACTTAGTGAAGAGCGTGTGAAAACTATTGTCCGTGATG 19587463 Query 44349 CAGTAAAGATAGAACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 | || |||| || |||||| | || || || || | ||| ||| | ||||| Sbjct 19587464 CGGTTGAGATTGAGAGAGAATTTGTTTGTGAAGCGC-TTCCTTGT-GCTTTGGTTGGAAT 19587521 Query 44407 GAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA 44463 ||| |||| ||||||| || |||||||| | |||| ||| | ||| | || Sbjct 19587522 GAACGGTGAA---TTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGA 19587578 Query 44464 ACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTC 44523 || ||||| | ||| |||| ||| || || || ||||||| |||||| ||||| Sbjct 19587579 GCTTGGTTGTGGGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGAATTGATTTC 19587638 Query 44524 GTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | | | || ||||| ||||||||||| || |||||||| || |||||| Sbjct 19587639 GCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAGTATCAG 19587687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397266837151255