Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq28674 116 3e-21 seq4 98.7 8e-16 seq28803 93.3 4e-14 seq1 86.0 5e-12 seq9364 84.2 2e-11 >seq28674 Length=75340 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||||||||| ||||| |||||| | |||||||||||||| || || || | || || | Sbjct 20748 CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCT 20689 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 |||| ||| ||| ||| | | | || | ||||| | || |||||| ||||| |||| Sbjct 20688 TATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTA 20629 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | |||||| || || |||||||| ||||| ||||| Sbjct 20628 TGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 20592 >seq4 Length=28907061 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| || ||||| ||| | | | ||| |||| || Sbjct 27565207 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 27565148 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| |||||||| || ||||| || | || || ||||| Sbjct 27565147 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 27565088 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| || |||| |||||||| ||||| || | ||| Sbjct 27565087 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGTCTTG 27565028 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 27565027 CCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 >seq28803 Length=52646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || ||||| || ||||| ||| | | | ||| |||| || Sbjct 33787 ACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 33846 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| |||||||| || ||||| || | || || ||||| Sbjct 33847 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 33906 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| || |||| |||||||| ||||| || | ||| Sbjct 33907 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTG 33966 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 33967 CCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 >seq1 Length=28142018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| || | || | ||| | ||| || || || ||||||||||| || Sbjct 1587161 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCA 1587220 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||||||| | ||| || |||||| | |||||||| || || ||||| || Sbjct 1587221 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGA 1587280 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| ||| | | | || | ||||| | | || || Sbjct 1587281 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 1587340 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || |||||||| ||||||||||| Sbjct 1587341 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 >seq9364 Length=1264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || ||||| || ||||| ||| | | | ||| |||| || Sbjct 530 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCCGTCCTCC 589 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || |||| | |||||| || ||||| || | || || ||||| Sbjct 590 AGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 649 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | |||| || || | |||||||| ||||| || | || Sbjct 650 ATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTA 709 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 710 CCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424732159244712