Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-22 seq38667 102 1e-16 seq7 86.0 8e-12 seq4 86.0 8e-12 >seq6 Length=22682783 Score = 122 bits (134), Expect = 1e-22 Identities = 229/334 (69%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | |||||| || |||||||| | || ||||| | | ||| Sbjct 20869472 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 20869531 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | || ||||| | |||||||||||| |||||||| || Sbjct 20869532 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 20869591 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||| | || | || | || || ||||||||||||||||| || | | ||| || Sbjct 20869592 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACAAGG 20869651 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 | |||||| ||| | | ||| | ||| | || ||| ||||| ||||||||||| Sbjct 20869652 TGAATTTTCTTTGGCCTTGTTAAACAAATCTCTTACTCTTGAAGCACCAACACCAACAAA 20869711 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGA 11780 |||||| | || | || | || | || | |||||| || |||| ||| || || | Sbjct 20869712 CATCTCAATGAATTCTGAACCTGA-TAGTGAAAAGAATGGAACTTTTGCTTCTCCTGCAA 20869770 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | ||| || || || |||||||| || ||||| Sbjct 20869771 TTGCTTTTGCTAGTAGTGTCTTTCCTGTCCCTGG 20869804 >seq38667 Length=153359 Score = 102 bits (112), Expect = 1e-16 Identities = 194/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| |||||||| || || | | ||| |||| || ||||| || ||||| || || Sbjct 118939 TCAAATCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCGTTCCCT 118880 Query 11597 GGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 |||| |||| | |||||| | ||||| |||||||| ||||||| || ||| Sbjct 118879 CC---ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACA 118823 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| || ||| || ||| | | || | ||| ||||| | ||||| ||| Sbjct 118822 ATACAAGGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACTCGAGAAGCACCAACA 118763 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTC 11772 || ||||||||||| ||||| | | | ||| | || || || |||||| || ||| Sbjct 118762 CCGACAAACATCTCAACAAACTCAGAACCTGAG-ATTGAGAAAAACGGGACACCTGCTTC 118704 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||||| || || ||| | || ||||| || || ||||| Sbjct 118703 ACCCGCAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGG 118662 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || ||||| || | || | || | | ||||| Sbjct 113478 TCAAGAATGTCAGCCCTATTGGTTGCTGCAATGACAATGATCTCGGTATTACCCTCAAAT 113419 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || ||||| || |||||||| || | Sbjct 113418 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCTCTTC---A 113362 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | ||||| ||||| |||||||| ||||||| || |||||||| Sbjct 113361 CCAATTCCAGTGCCTCGTTGTCCTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 113302 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || | ||| ||||| | ||||| ||||||||| Sbjct 113301 GGAGCGTTTTCTTTGGCCTTCTTGAATATATCACGAACTCGAGAAGCACCAACACCAACA 113242 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | | ||| | || || || |||||| || ||||||||| Sbjct 113241 AACATCTCAACAAACTCAGAACCTGAG-ATTGAGAAAAACGGGACACCTGCTTCACCCGC 113183 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || ||| | || ||||| || || || || Sbjct 113182 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCCGG 113147 >seq7 Length=30551617 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| |||||||| ||||||||||| | Sbjct 4917338 AAAACCATCCATCTCAGTCAAAAGCTGATTAATAGTTTGTTCCCTCTCATCATTCCC--- 4917282 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||| | | || | || || |||||||| |||||||| || ||||| Sbjct 4917281 ACCACCAAGTCCAGCTCCTCTCTGTCTCCCAACTGCATCAATTTCATCAATAAACACAAT 4917222 Query 11656 ACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || || ||| || | ||||| | ||| | |||||| ||||| | Sbjct 4917221 GCAAGGCGCCTTCGACTTC----GCCTTCTCAAACAAATCCCTAACCCTAGAAGCACCAA 4917166 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||||||||||| |||||||| | | || | ||| | ||| || ||| | || Sbjct 4917165 CACCAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGCACACCAGCTT 4917106 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||| || | || | || | || |||||||| || || || Sbjct 4917105 CACCGGCTACCGCCCTCGCCAATAGCGTCTTTCCTGTTCCCGG 4917063 >seq4 Length=28907061 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 189464 TTGGAATA--GGTGCAAATGATGTTGCCAACGCTTTCGCAACATCAGTTGGATCAGGGGC 189521 |||||||| ||||| ||||||||||| || || | | ||| ||||||||||| || || Sbjct 5889544 TTGGAATATTGGTGCGAATGATGTTGCAAATGCAATGGGAACTTCAGTTGGATCTGGTGC 5889603 Query 189522 TTTGAAAGTTAAACAAGCCGTACCACTTGCGGCTGTGTGTGAATTCTCGGGGTCTCTGTT 189581 |||| | ||| ||||| || || || |||| ||||| || ||| | |||| Sbjct 5889604 ATTGACACTTAGGCAAGCTGTTTTGACAGCTGCAGTGTTGGAATTTTCAGGGGCATTGTT 5889663 Query 189582 TATGGGAAGTCATGTCGTAAAAACAATACGAAAAGGAAT 189620 ||||||| ||||||| || ||||| | ||||| || Sbjct 5889664 GATGGGAACTCATGTCACAAGTACAATGCAGAAAGGGAT 5889702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627725434029600