Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 >seq2 Length=32560536 Score = 105 bits (116), Expect = 7e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCAT 59989 ||||| || ||||| ||| | ||||| || || | | |||||||| || | || | Sbjct 19587196 AAAGCTGATTGGGCTATGAAATGGATCGATTCATCT-GATTCATTTGCTGAAAGAATCGT 19587254 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| || || ||||| || || || ||||| || ||||| ||||||||||| Sbjct 19587255 TGCTTTTGCTTGTGTTGAAGGTATATTTTTTTCTGGAAGTTTTTGTGCAATTTTCTGGCT 19587314 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||||| ||||| | ||||| || | | ||| || |||||||| ||||| || ||||| Sbjct 19587315 TAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACGTGACGA 19587374 Query 60110 GGGCCTCCAT 60119 || || ||| Sbjct 19587375 AGGTCTTCAT 19587384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548257044475440