Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9364 118 7e-22 seq4 111 1e-19 seq28626 109 3e-19 seq28674 107 1e-18 seq28803 102 5e-17 seq3 102 5e-17 seq5139 93.3 3e-14 seq1 93.3 3e-14 >seq9364 Length=1264 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| ||| ||||||||| ||||| ||||| | ||| || ||| Sbjct 521 AGACGGAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGC 580 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || ||||| || ||||| || |||||||| |||||||| || | || ||| Sbjct 581 CCGTCCTCCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCC 640 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||||| | || || || ||||| ||||| | || Sbjct 641 TTATCT-TGAATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGT 699 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || | || || ||||| || ||||| Sbjct 700 AATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | ||||| || || || || ||||| || || | || ||||| || || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | ||| || | ||| |||||| |||||| || Sbjct 176 ATACCCTCCTTGTC-CTGAATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAAC 234 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || ||||||||||||||||| Sbjct 235 CTCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 282 >seq4 Length=28907061 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 27565909 CCTCCCCTCAGACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 27565850 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| || || || || ||||| || || | || || ||||| || Sbjct 27565849 AAGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGA 27565790 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||||| | || || | |||||||||| |||||| | Sbjct 27565789 ATGCCCTCCTTGTCCTGT-ATCTTA-GCCTTCACATTGTCAATTGTGTCTGAGCTCTCAA 27565732 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||||| || ||||| || | |||||||||||||||||||| Sbjct 27565731 CCTCCAAAGTTATTGTCTTACCAGTAAGAGTTTTCACAAAAATCTGCAT 27565683 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| || ||||||||| ||||| ||||| | ||| || ||| Sbjct 27565216 AGACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGC 27565157 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | |||||| |||||||| || | || ||| Sbjct 27565156 CCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCC 27565097 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | ||||| | || || ||| ||||| ||||||| || Sbjct 27565096 TTATCT-TGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGT 27565038 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || || ||||| Sbjct 27565037 GATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||||||| | || ||||| |||||| |||||||| || || | | Sbjct 27566137 CCACCACGAAGGCGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 27566078 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || | ||| || || ||||| || || | ||| || || || || Sbjct 27566077 AGGGTCCTTCCATCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 27566018 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| || ||||| || || || || || ||| || || || Sbjct 27566017 ATTCCCTCCTTGTCT-TGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTAC 27565959 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || |||||||| |||||||| Sbjct 27565958 CTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 >seq28626 Length=87040 Score = 109 bits (120), Expect = 3e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| | ||| |||| | || ||||| |||||||||||||| Sbjct 42173 TCTTTCTGAATATTATAATCAGCAAGAGTTCATCCATCCTCAAGCTGTTTACCGGCAAAG 42232 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || |||||||| || || || | |||||||| || ||| || | || || | Sbjct 42233 ATCAATCGCTGTTGATCAGGTGGAATCCCCTCCTTATC-CTGAATCTTGGCCTTCACATT 42291 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || |||||||| || | || ||||| || || || ||||| ||||| Sbjct 42292 ATCAATAGTATCAGAACTCTCCACCTCAAGAGTAATCGTCTTCCCCGTCAACGTCTTCAC 42351 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 42352 AAAAATCTGCAT 42363 >seq28674 Length=75340 Score = 107 bits (118), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||| || || ||||| ||||||||| Sbjct 20815 GCCGCCGCGGAGACGGAGAACGAGATGGAGCGTTGATTCTTTTTGGATGTTATAANNNNN 20756 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || ||||||| |||||||| ||||| || || | |||||||||||| || || Sbjct 20755 NNNCG---GC-CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGG 20700 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||| ||| ||| ||| | ||| ||| | || ||||| | || | Sbjct 20699 AATTCCTTCCTTATCTTGGAT-TTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAA 20641 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | || | |||||| ||||| ||||||| |||||||| || ||||||||| |||| Sbjct 20640 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATGATGAT 20586 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| | ||| || | | |||||||| |||||||| ||||| Sbjct 21234 TCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCTTCAAGCTGTTTACCAGCAAAG 21175 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || ||||| || || || || | |||||||| || ||||| | || || | Sbjct 21174 ATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTTC-GCCTTCACATT 21116 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || |||||||| |||| || ||||| || || || ||||| ||||| Sbjct 21115 ATCAATAGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTTCCCGTCAACGTCTTCAC 21056 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 21055 AAAAATCTGCAT 21044 >seq28803 Length=52646 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| ||||| || ||||| ||||| | | |||||| | ||||| || || Sbjct 33336 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTG 33395 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || || | || ||||| || || | |||||||||||| ||| | Sbjct 33396 CTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCT-TGAATCT 33454 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||||| | ||| |||||| |||||| || |||| ||||| || || || | Sbjct 33455 TAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTGCCAG 33514 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || ||||||||||||||||| Sbjct 33515 TAAGAGTCTTCACAAAAATCTGCAT 33539 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| ||||| || ||||||||||| | | |||| | |||||||| || Sbjct 33108 ATGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAAGGTTCTGCCATCTTCAAGCTG 33167 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || || | || ||||| || || | ||||||||||| ||||| Sbjct 33168 CTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTT 33227 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 ||||| ||| |||||| |||||| || |||| || || || || || || Sbjct 33228 AGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCTGT 33287 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| |||||||| Sbjct 33288 CAATGTCTTCACAAAGATCTGCAT 33311 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 13187 CCTCCCCTCAGACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCT 13128 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||| | || || || || ||||| || || | || || |||| || Sbjct 13127 AAGGTTCGGCCATCTACGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGAGGGA 13068 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||| |||||| ||| ||||| | || || | ||| |||||| |||||| | Sbjct 13067 ATGCCCTTCTTGTCCTGT-ATCTTA-GCCTTCACATTGTCAATCGTGTCTGAGCTCTCAA 13010 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| |||||||| ||||| || | ||||| || ||||||||||| Sbjct 13009 CCTCCAAAGTTATCGTCTTACCAGTAAGAGTTTTGACGAAAATCTGCAT 12961 >seq3 Length=31061273 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| || ||| ||||| || ||||| ||||| | Sbjct 12366630 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 12366571 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| || || || || ||||| || | | || ||||| || || Sbjct 12366570 AAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 12366511 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | ||||| | ||| || ||| |||||| || Sbjct 12366510 ATACCCTCCTTGTCT-TGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAAC 12366452 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || |||||||| || || | ||| || |||||||||||||| Sbjct 12366451 CTCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | || || ||| ||| || |||||||||||||| | Sbjct 12367314 CCTCCCCTCAGACGAAGGACAAGGTGAAGCGTGGACTCTTTCTGAATGTTATAATCAGCC 12367255 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||| || || || |||||||| || | || ||||| || || Sbjct 12367254 AAAGTCCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 12367195 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || || |||| |||| ||| || || || || | ||| |||||| |||||| | Sbjct 12367194 ATACCTTCTTTGTCCTGT-ATC-TTGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTA 12367137 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 12367136 CCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 12367088 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 12366859 GCCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 12366800 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | ||||| || || || |||||||| || || | || ||||| || || Sbjct 12366799 CAAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAGG 12366740 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | || || | |||||||||| ||| || | Sbjct 12366739 AATACCCTCCTTGTCTTGTATC-TTGGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTA 12366681 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || || | ||| || |||||||||||||| Sbjct 12366680 CCTCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366632 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||||||| ||| ||||||||| ||||| ||||| | | Sbjct 12366174 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 12366115 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || || || || ||||| || | |||||| ||||| | || Sbjct 12366114 AGGGTACGCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGG 12366055 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| || | ||||| | || || ||| ||||| || Sbjct 12366054 ATCCCTTCCTTATCT-TGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAAC 12365996 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || | || || || || | || || ||||| || ||||| Sbjct 12365995 TTCGAGAGTAACGGTCTTGCCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 >seq5139 Length=1344 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| ||||||||| ||||| ||||| | ||| || ||| Sbjct 1314 AGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGC 1255 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | |||||| |||||||| || || ||| Sbjct 1254 CCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGTTCCCTTCC 1195 Query 34609 TTGTCTGTGATCTT 34622 || ||| ||||| Sbjct 1194 TTATCTTGAATCTT 1181 >seq1 Length=28142018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | || || ||| |||||| |||||||| || || | | Sbjct 1586183 CCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 1586242 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || | ||||| || || || || | | ||| || || || || Sbjct 1586243 AGGGTCCTTCCATCCTCCAACTGTTTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGG 1586302 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||| ||| | || || || ||| || ||| ||||||||| Sbjct 1586303 ATACCTTCCTTATCC-TGAATTTTGGCCTTCACATTATCAATGGTATCTGAGCTCTCCAC 1586361 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||| || ||||| || || || || |||||||||||||| Sbjct 1586362 CTCCAAGGTTATGGTCTTACCAGTCAAGGTCTTGACAAAAATCTGCAT 1586409 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | ||||| || |||||| || || || ||||| | Sbjct 1586933 CCACCACGAAGACGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCC 1586992 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| ||||| || || |||||||| || || | ||| ||||| || || Sbjct 1586993 AAAGTACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 1587052 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| |||| || | || ||| | || ||||| ||| || || Sbjct 1587053 ATTCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAAC 1587111 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || || || || |||||||| Sbjct 1587112 CTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCAT 1587159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314579809462883