Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq28107 141 1e-28
seq29563 98.7 1e-15
>seq28107
Length=123132
Score = 141 bits (156), Expect = 1e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 176496 TGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGG 176555
||||||||| || || || || | || || || ||||||||| | |||| ||| | ||
Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878
Query 176556 TCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTT 176615
||| ||| || || |||||||||||||| || || || ||||| |||||||||||| |
Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938
Query 176616 TGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGG 176675
|||||| || || ||||| || ||||| ||||| || || | ||| | || ||||| ||
Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998
Query 176676 TGTGTTTGGTGGATCTCT 176693
||| || || || || ||
Sbjct 14999 TGTATTCGGCGGCTCACT 15016
>seq29563
Length=4854
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 176548 CCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607
||| | ||||| ||| || || |||||||||||||| || || || ||||| ||||||
Sbjct 4286 CCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAAC 4345
Query 176608 TTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATG 176661
|||||| ||||||| || | ||||| || ||||| ||||| ||||| || |||
Sbjct 4346 TTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATG 4399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603199811752320
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |