Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq29228 228 1e-54 seq2 224 1e-53 seq28107 143 3e-29 seq1 140 4e-28 seq6 132 6e-26 seq4 132 6e-26 seq7 127 3e-24 seq28666 125 9e-24 seq29563 113 6e-20 seq5 91.5 2e-13 seq38617 89.7 6e-13 seq28131 86.0 8e-12 >seq29228 Length=6152 Score = 228 bits (252), Expect = 1e-54 Identities = 312/433 (72%), Gaps = 7/433 (2%) Strand=Plus/Minus Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 ||||||| | ||| || ||| | ||||| ||| |||| || || || || ||| ||| Sbjct 5061 TATATGATATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGTTAG 5002 Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908 | ||| | | || || || | || |||||||||| ||||| ||||||||||| || | Sbjct 5001 GCTCTTTGACCATTATTGTAGCTCACGATATGTATGCTATGCCTCCTTATCCATACCTAG 4942 Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968 |||||| ||| ||| | | ||| ||||| ||||| |||||||| |||| ||| | Sbjct 4941 CTATTGACTATGGTACACAACTCTCATTGTTCACACATCACATGTGGATTGGTGATTT-C 4883 Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATCC---TG 184025 | || || ||||| | ||||||| | ||| |||| ||||||||||| |||| | Sbjct 4882 TCATAGTTGGTGCTGCTACACATGCAACCATTTTTATGGTAAGAGACTATGATCCAACTA 4823 Query 184026 TTCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTC 184085 || | | | | || |||||||| | | |||| | | | ||||||||||| | Sbjct 4822 CTCGATACAACG---ATCTATTAGATCGTGTTCTTAGACATCGCGATGCAATCATATCAC 4766 Query 184086 ACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATG 184145 | | |||||||| | || |||||||||||||| ||||||||| | |||||||| |||| Sbjct 4765 ATCTCAACTGGGTGGGTATATTTTTAGGTTTTCACAGTTTTGGTTTGTATATTCATAATG 4706 Query 184146 ATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTAC 184205 ||| ||||| || || || | ||| | ||| | || ||||| || |||||||||| Sbjct 4705 ATACCATGAGTGCTTTAGGACGCCCTCAAGATATGTTTTCAGATACCGCTATACAATTAC 4646 Query 184206 AACCTGTATTTGC 184218 ||||||| ||||| Sbjct 4645 AACCTGTCTTTGC 4633 >seq2 Length=32560536 Score = 224 bits (248), Expect = 1e-53 Identities = 312/436 (72%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 ||||||| | ||| || ||| | |||| ||| |||| || || || || ||| ||| Sbjct 17954576 TATATGAGATCCTAACAACGTCATGGCATGATCAATTATCTCTTAACCTAGCTATGTTAG 17954517 Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908 | ||| | | || || || | || ||||||||||| ||||| ||||||||||| | | Sbjct 17954516 GCTCTTTGACCATTATTGTAGCTCACCATATGTATGCTATGCCTCCTTATCCATACATAG 17954457 Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968 |||||| ||| ||| | | ||| ||||| ||||| |||||||| || || |||| Sbjct 17954456 CTATTGACTATGGTACACAACTCTCATTGTTCACACATCACATGTGGATTGGGGGATTTC 17954397 Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTG 184025 | || || |||| | |||||||| | ||| ||| ||||||||||| ||| || Sbjct 17954396 TCATAGTTGGTGTTGCTGCACATGCAGCCATTTTTATAGTAAGAGACTATGATCCAACTA 17954337 Query 184026 TTCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTC 184085 |||| | | | || |||||||| | | |||| | | | ||||||||||| | Sbjct 17954336 CTCAATACAACG---ATCTATTAGATCGTGTTCTTAGACATCGCGATGCAATCATATCAC 17954280 Query 184086 ACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATG 184145 | | |||| ||| | || |||||||||||||| ||||||||| | |||||||| |||| Sbjct 17954279 ATCTCAACTAGGTGGGTATATTTTTAGGTTTTCACAGTTTTGGTTTGTATATTCATAATG 17954220 Query 184146 ATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTAC 184205 ||| ||||| || || || | ||| | ||| | || ||||| || |||||||||| Sbjct 17954219 ATACCATGAGCGCTTTAGGACGCCCTCAAGATATGTTTTCAGATACCGCTATACAATTAC 17954160 Query 184206 AACCTGTATTTGCACA 184221 ||||||| ||||| || Sbjct 17954159 AACCTGTCTTTGCTCA 17954144 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || || || |||||||| || || ||||| || |||||||| | || Sbjct 17442401 AATGTCCCATTCAGTAAAGATTTATGATACATGTATAGGATGTACTCAATGTGTCCAAGC 17442342 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 ||||| ||||||||||||||| | ||||||||||| || ||||| |||||||| || Sbjct 17442341 CTGTCCCACAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCTAAGCAAATAGC 17442282 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAG 182643 ||| | | ||||| ||||| |||||||| |||||||| Sbjct 17442281 TTCTGCCCTAAGAACAGAGGACTGTGTAGGTTGTAAGAG 17442243 >seq28107 Length=123132 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 190048 TGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGG 190107 |||||| |||||||| || || | || || ||||||| ||| | | |||||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 190108 TCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTT 190167 |||||| || || |||||||||||| |||| ||||| ||||| |||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 190168 TGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGG 190227 |||||| || || || |||||||| |||||||| || || | ||| ||||||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 190228 TATGTTTGGTGG 190239 | | || || || Sbjct 14999 TGTATTCGGCGG 15010 >seq1 Length=28142018 Score = 140 bits (154), Expect = 4e-28 Identities = 204/288 (71%), Gaps = 14/288 (5%) Strand=Plus/Minus Query 183872 CATCATATGTATGCAATGCCACCTTATCCATAT--------CTTGGTATTGAATATCCAA 183923 || ||||||||||| ||||| ||||||||||| || | || ||| ||| | Sbjct 1263705 CACCATATGTATGCTATGCCTCCTTATCCATACGACCATACCTAGCTACTGACTATGGTA 1263646 Query 183924 CAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCAT 183983 || | | ||| ||||| || || |||||||| || || ||||| || || ||||| Sbjct 1263645 CACAACTCTCATTGTTCACACACCACATGTGGATTGGGGGATTTCTCATAGTTGGTGCTG 1263586 Query 183984 CAGCACATGCTTCAATTGCTATGATAAGAGACTATAATCC---TGTTCAACATATGGGAA 184040 | |||||||| | ||| |||| |||||| |||| |||| | || | | | | Sbjct 1263585 CTGCACATGCAGCCATTTTTATGGTAAGAGGCTATGATCCAACTACTCGATACAACG--- 1263529 Query 184041 ATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTAT 184100 || |||||||| | | |||| | | | ||||||||||| || | |||||||| | Sbjct 1263528 ATCTATTAGATCGTGTTCTTAGACATCGCGATGCAATCATATCACATCTCAACTGGGTGT 1263469 Query 184101 GCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATA 184148 | || ||||||| |||||| ||||||||| | |||||||| ||||||| Sbjct 1263468 GTATATTTTTAGATTTTCACAGTTTTGGTTTGTATATTCATAATGATA 1263421 Score = 125 bits (138), Expect = 9e-24 Identities = 185/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 190890 GTGGTTGGTTCACAGGAACTACATTTGTTACTAGTTGGTATACACATGGAATTGCATCTT 190949 |||||||||||||||| || || ||||| ||| |||||||| |||||| | ||| || Sbjct 23237499 GTGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTT 23237558 Query 190950 CATACCTTGAAGGAGCAAACTTTTTGACAGCAGCAGTATCCACACCTGGTGATGCTATGG 191009 | || | ||||| ||||| || || || ||||| || || |||| | || | | | Sbjct 23237559 CCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAG 23237618 Query 191010 GTCATAGTTTATTATTCTTATGGGGTCCAGAGGCACAAGGTTCATTTGTTCGTTGGTTAC 191069 ||| ||| || || | |||||||| | ||||| | ||| |||||| | Sbjct 23237619 CACATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTC 23237678 Query 191070 AAATTGGTGGACTTTGGAACTTTGTAGCACTTCATGGTGTATTTGGTCTCATAGGATTCA 191129 || | ||||| | |||| ||||| || ||||| |||| || || | ||||| || | Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 191130 TGTTACGTCAGTTTGAAATTGC 191151 |||||||||| |||||| |||| Sbjct 23237739 TGTTACGTCAATTTGAACTTGC 23237760 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 184041 ATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTAT 184100 || |||||||| | | |||| | | | ||||||||||| || | || ||||| | Sbjct 12518589 ATCTATTAGATCGTGTTCTTAGACATCGCGATGCAATCATATCACATCTCAATTGGGTGT 12518648 Query 184101 GCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCAT 184160 | || |||||||||||||| ||||||||| | |||||||| ||||||| ||||| || | Sbjct 12518649 GTATATTTTTAGGTTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGCGCTT 12518708 Query 184161 TGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATT 184203 | || | ||| | ||| | || ||||| || |||||||| Sbjct 12518709 TAGGACGCCCTCAAGATATGTTTTCAGATACCGCTATACAATT 12518751 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 184984 AAAATTTCCAAAATTTAATCAAGATTTGGCAAGTGATCCTACAACTAGGAGATTGTGGTA 185043 || |||||||| |||| ||| | || || || || || ||| | | | |||| Sbjct 27839512 AAGATTTCCAAGGTTTAGCCAAAACTTAGCTCAGGACCCCACTACTCGTAATATTTGGTT 27839571 Query 185044 TGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAGT-TAT 185102 ||| | || || ||||||||||||||||||||| | |||| || || || | || | | Sbjct 27839572 TGGTATTGCTACCGCACATGACTTTGAGAGTCATAATGATATTACCGAGGA-ATGTCTTT 27839630 Query 185103 ATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGTTGCAG 185162 |||| || | |||||| | || || || || | ||||| || ||||| ||| | | | Sbjct 27839631 ATCAGAATATTTTTGCTTCTCATTTCGGACAATTAGCAATCATTTTTCTGTGGACTTCCG 27839690 Query 185163 GTAATTTAATTCATATAGCATGGCAAGGTAACTTTGA 185199 | ||| | ||||| |||| |||||||| || ||||| Sbjct 27839691 GGAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGA 27839727 >seq6 Length=22682783 Score = 132 bits (146), Expect = 6e-26 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 182557 TGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAG 182616 ||||||||||||| | ||||||||||| || ||||| || ||||| ||||| | || || Sbjct 15224744 TGTATTAGAAATGATACCTTGGGATGGATGTAAAGCTAAACAAATAGCTTCTGCCCCAAG 15224685 Query 182617 AACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAAG 182676 ||| ||||| |||||||| |||||||| ||||| | || ||||| || || || ||||| Sbjct 15224684 AACAGAGGACTGTGTAGGTTGTAAGAGGTGTGAGTCCGCTTGTCCGACGGATTTCTTAAG 15224625 Query 182677 TATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGCATATT 182729 | |||| ||||| || | ||||| || |||| |||||||| | |||| Sbjct 15224624 TGTTCGAGTTTATTTATGGAGTGAAACAACTCGAAG-TTGGGTCTATCTTATT 15224573 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/159 (74%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTGTCCATTGGAT 182557 || || || |||||||| || || |||| || |||||||| | | ||| || Sbjct 10040425 GTAAAGATTTATGATACATGTATGAGATGTACTCAATGTGTCTGAGTCTATCCCACAAAT 10040484 Query 182558 GTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTT---CCT----C 182610 |||||||||||| | | ||||||||| || ||||| |||||||| |||| ||| | Sbjct 10040485 GTATTAGAAATGATACATTGGGATGGATGTAAAGCTAAGCAAATAGCTTCTGCCTTCTGC 10040544 Query 182611 ACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGA 182649 || | ||| |||||||||||||| |||||| | ||||| Sbjct 10040545 CCCAAAAACAGAGGATTGTGTAGGTTGTAAGTGGTGTGA 10040583 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/126 (76%), Gaps = 8/126 (6%) Strand=Plus/Minus Query 188653 TATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAGGATACACTATGAGTTT 188712 ||||| ||||||||||||||| | | | | || | || || | ||| ||| Sbjct 20320032 TATCCGTATGAAAAATTAATAACGT--------TTCCGCGGTTGAATCCATTTTGAATTT 20319981 Query 188713 GATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTATTAATTTACCTGTAGTT 188772 ||||||||||||||||||||||||||||| | || |||||||| ||||||| || ||| Sbjct 20319980 GATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTATAGATTTACCCGTTGTT 20319921 Query 188773 GATTGG 188778 |||||| Sbjct 20319920 GATTGG 20319915 >seq4 Length=28907061 Score = 132 bits (146), Expect = 6e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 186944 GTTTGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATT 187003 |||||||| || ||||||||||| | || || ||| | || ||||||||||| || ||| Sbjct 18391850 GTTTGGGCTACTAGATTTATGTTCTTAATCTCATGGCGCGGATATTGGCAAGAATTGATT 18391909 Query 187004 GAGACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGAT 187063 || ||| | || ||||| ||| || | || || | |||||| | | ||||||||| Sbjct 18391910 GAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCAAATTTGATTCGATGGAGAGAT 18391969 Query 187064 AAACCAGTGGCACTTTCTATTGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATA 187123 ||| ||||||| ||||| ||||| ||||||||| | ||||| ||| || ||| | || Sbjct 18391970 AAATCAGTGGCTCTTTCCATTGTGCAAGCAAGATTGGTTGGATTAGTCCACTTTTCAGTA 18392029 Query 187124 GGATTTGTGCTTACCTATGCA 187144 || | | | |||| |||||| Sbjct 18392030 GGTTATATATTTACTTATGCA 18392050 Score = 120 bits (132), Expect = 4e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 185051 GCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAGT-TATATCAAAA 185109 || || ||||||||||| ||||||||||| |||| || || || | || | |||||||| Sbjct 3369072 GCTACCGCACATGACTTCGAGAGTCATGATGATATTACCGAGGA-ACGTCTTTATCAAAA 3369130 Query 185110 ATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGTTGCAGGTAATTT 185169 | |||||| | || || || || | ||||| || ||||| ||| | | || ||| | Sbjct 3369131 CATTTTTGCTTCTCATTTCGGACAATTAGCAATCATTTTTCTGTGGACTTCCGGGAATCT 3369190 Query 185170 AATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACCCACAACATGTGAT 185229 ||||| |||| || ||||| || | ||| || ||| || || |||||| | Sbjct 3369191 CTTTCATGTAGCTTGACAAGGAAATTCTGAGGCATTGGTACAGGATCCTTTACATGTAAG 3369250 Query 185230 ACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAA 185269 |||||| || ||| ||| |||||||| |||||||||||| Sbjct 3369251 ACCTATTGCTCATCCAATTTGGGATCCCCATTTTGGTCAA 3369290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 11/226 (5%) Strand=Plus/Plus Query 183938 TTCACCCATCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCTTCA 183997 ||||| ||||| |||||||| | | ||||| || || |||| |||||||| | Sbjct 21225479 TTCACACATCACATGTGGATTGAGGAATTTCTCATAGTTGGTGTTGTTGCACATGCAGCC 21225538 Query 183998 ATTGCTATGATAAGAGACTATAATC---CTGTTCAACATATGGGAAATGTATTAGATAGA 184054 ||| ||| ||||||||||| ||| || || | | | | || |||||||| | Sbjct 21225539 ATTTTTATAGTAAGAGACTATGATCCAACTACTCGATACAACG---ATCTATTAGATCGT 21225595 Query 184055 ATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTAGGT 184114 | |||| | | | ||||||||||| || | |||||| || || ||||||||| Sbjct 21225596 GTTCTTAGACATCGCGATGCAATCATATCACATCTCAACTGG---TGTATATTTTTAGGT 21225652 Query 184115 TTT--CATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGC 184158 ||| |||| ||||| | | |||||||| ||||||| |||||| || Sbjct 21225653 TTTCACATATTTTTGCTTTGTATATTCATAATGATACTATGAGCGC 21225698 >seq7 Length=30551617 Score = 127 bits (140), Expect = 3e-24 Identities = 200/283 (71%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 ||| || || |||| ||||| |||||||||| ||| | ||||| | | || | Sbjct 8313012 ACCAGTAACTATTCAATATCCGTATGAAAAATCAATCACATCAGAACGTTTCCACGGTCG 8313071 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 || || | ||| |||||||||||||||||||||||||||||||| | || |||||||| Sbjct 8313072 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 8313131 Query 188757 TAATTTACCTGTAGTTGATTGG------GTAATGAATAAACAAACTAAGAAGAAGGAACT 188810 ||||||| || ||||||||| | |||| ||| | | ||||| | | || Sbjct 8313132 AGATTTACCCGTTGTTGATTGGAAACTAGAAATGGATATTCGA---AAGAA-ACG---CT 8313184 Query 188811 T-AGAAATTATTCAATTGACTTTGGTGCTTGCATTTTCTGTGGGAATTGTGTAGAATACT 188869 | |||||| ||||| || || || ||||| ||||| || | | | || || | Sbjct 8313185 TGCTAAATTACAGTATTGATTTCGGAATCTGTATTTTTTGTGGTAACTATATTGAGTATT 8313244 Query 188870 GTCCAACTAACTGTCTATCCATGACAGAAGAGTATGAACTATC 188912 ||||||| || ||| |||| | ||| ||||| ||||| || || Sbjct 8313245 GTCCAACCAATTGTTTATCGACGACTGAAGAATATGAGCTTTC 8313287 Score = 111 bits (122), Expect = 2e-19 Identities = 145/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 186652 TTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCT 186711 ||| |||||||| || |||||||||||||||||| ||| | |||||| || || ||| | Sbjct 16540859 TTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTT 16540800 Query 186712 CTCTGTGTTCTGGGCATTCAATACAATAGCATGGGCAGATTTTTATTGGCACTGGAAGAA 186771 | || |||||| || ||||| || | ||||| |||||||||||| |||||| | Sbjct 16540799 AGCAGTTTTCTGGATGTTAAATACCATTGGATGGGTTACTTTTTATTGGCATTGGAAGCA 16540740 Query 186772 CCTTGCTAGTTGGCAAGGTAATCAGGCACAATTCAATACATCAGGAACATATCTTATGGG 186831 | || | ||||| |||||| ||||||| || ||| | | ||||| Sbjct 16540739 CATTACATTATGGCAGGGTAATGTTTCACAATTTAACGAATC--------TTTTGATGGG 16540688 Query 186832 TTGGTTCAGAGATTATCTCTGG 186853 ||||| ||||||||||| ||| Sbjct 16540687 ATGGTTAAGAGATTATCTATGG 16540666 >seq28666 Length=77023 Score = 125 bits (138), Expect = 9e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 182556 ATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTA 182615 |||||||||||||| | ||||||||||| || ||||| ||| |||| | ||| | || | Sbjct 5852 ATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCTAAGTAAATAGTTTCTGCCCCAA 5793 Query 182616 GAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAA 182675 |||| ||||| |||||||| |||||||| ||||| | || || || || || || |||| Sbjct 5792 GAACAGAGGACTGTGTAGGTTGTAAGAGGTGTGAGTCCGCTTGCCCGACGGATTTCTTAA 5733 Query 182676 GTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGCATATT 182729 || || | |||| || | ||||| || |||| ||||||||| | |||| Sbjct 5732 GTGTTTGAATTTATTTATGGAGTGAAACAACTCGAAGTATGGGTCTATCTTATT 5679 >seq29563 Length=4854 Score = 113 bits (124), Expect = 6e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 190098 ACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCA 190157 ||||| |||||||||| || || |||||||||||| |||| ||||| ||||| |||| Sbjct 4284 ACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCA 4343 Query 190158 ACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAG 190217 |||| ||| ||||||| || | || |||||||| |||||||| ||||| || ||| | Sbjct 4344 ACTTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTAT 4403 Query 190218 GTGTAGC 190224 |||| || Sbjct 4404 GTGTCGC 4410 >seq5 Length=15272566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 183630 GTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATTG 183689 |||| ||| |||| ||||| ||||||||||| |||| || ||| || | ||| |||||| Sbjct 482530 GTCTATGGCTGACTGATATTGCACATCATCATTTAGCTATTGCAATTCTTTTTCTCATTG 482471 Query 183690 CAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGATATTAGA 183747 | ||||||| |||| | || || |||||||| ||||| || ||| | || ||||| Sbjct 482470 CCGGTCATACGTATAGAACTAATTGGGGTATCGGTCATGGTATAAAAAATATTTTAGA 482413 >seq38617 Length=370667 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 188665 AAATTAATACCCTCAGAGAGATATAGAGGGAGGATACACTATGAGTTTGATAAATGTATT 188724 |||||| | | ||||| | | | | || | || || | ||| ||||||||||||||| Sbjct 86068 AAATTAGTCACATCAGAACGTTTTCGCGGTCGAATCCATTTTGAATTTGATAAATGTATT 86127 Query 188725 GCTTGTGAAGTATGTGTAAGAGTTTGTCCTATTAATTTACCTGTAGTTGATTGG 188778 ||||||||||||||||| | || |||||||| ||||| | || ||||||||| Sbjct 86128 GCTTGTGAAGTATGTGTTTGTGTATGTCCTATGGATTTATCCGTTGTTGATTGG 86181 >seq28131 Length=113845 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 183629 AGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATT 183688 ||| | ||| |||| ||||| ||||||||||| |||| || ||| || | ||| ||||| Sbjct 99069 AGTTTGTGGCTGACCGATATGGCACATCATCATTTAGCTATTGCAATTCTTTTTCTCATT 99010 Query 183689 GCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGATATT 183744 || |||||||||||| | || |||| | ||||| || |||| || ||||||| Sbjct 99009 GCCGGTCATATGTATAGAACTAACTTCAGGATTGGGCA--CAATATAAAAGATATT 98956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631118976705160