Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 6e-12 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||||||||||||| | || | || || ||| |||||||| || ||||| || | Sbjct 20758269 ACATGAGCGATCATGCATGTCAAGAGCGCATAAGATGCAATGTTAAAAGGCACGCCCAGG 20758328 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | ||||||||||| | || || || | ||||||||| || || ||||| Sbjct 20758329 CCCATGTCGGCAGATCGTTGATACATTTGACATGATAACTCCCCATTTGCCACATAGAAC 20758388 Query 6737 TG 6738 || Sbjct 20758389 TG 20758390 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || ||||| || || ||||||||| | || || || | ||||||||||| | |||||| Sbjct 20758390 CAGTTCTATGTGGCAAATGGGGAGTTATCATGTCAAATGTATCAACGATCTGCCGACATG 20758331 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || ||||| || |||||||| ||| || || | || | ||||||||||||| Sbjct 20758330 GGCCTGGGCGTGCCTTTTAACATTGCATCTTATGCGCTCTTGACATGCATGATCGCTCAT 20758271 Query 34727 GT 34728 || Sbjct 20758270 GT 20758269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448043586312720