Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9364 105 5e-18 seq3 98.7 7e-16 seq4 95.1 9e-15 >seq9364 Length=1264 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || ||||| |||| || || || || Sbjct 738 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGAGTTCC 679 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||||| || || ||||| | || ||| | Sbjct 678 GATACCATAGACAAT--GTTAAGGCCAAAATTCAAGATAAGGAAGGGATCCCACCGGACC 621 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || |||||||| |||||||| |||| |||| || | | | ||||||||| Sbjct 620 AGCAGCGTTTGATTTTTGCTGGAAAACAGCTGGAGGACGGGCGGACCCTTGCCGATTACA 561 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | ||||||||| | ||| | ||||| || Sbjct 560 ACATCCAAAAGGAGTCCACCCTCCATTTGGTTCTCCGTCTCCGTGGTGG 512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || |||||||| || |||||| | || || || ||| | Sbjct 282 ATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATTACTTTGGAGGTTGAGAGCTCA 223 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || ||| || || ||||| || ||| | || || | Sbjct 222 GACACTATTGACAAT--GTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCCCCAGACC 165 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| || | || || | || | ||| ||||||||| Sbjct 164 AGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACA 105 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | ||| | || | |||||| | || || Sbjct 104 ACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGG 56 >seq3 Length=31061273 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || ||||| || || ||||| | || || |||||| | Sbjct 12366632 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAGACCATTACTTTGGAGGTAGAAAGCTCA 12366691 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || ||| ||||| || ||| |||| || | Sbjct 12366692 GACACAATTGACAAT--GTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCTCCAGACC 12366749 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||||||||| || |||| || | || | |||| ||||||||| Sbjct 12366750 AGCAAAGGTTGATTTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACA 12366809 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| | ||| | || | |||||| | || ||| Sbjct 12366810 ACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGC 12366859 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || ||||| || ||| ||||| | || || || ||| | Sbjct 12366404 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCA 12366463 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || || ||||| || ||| |||| || | Sbjct 12366464 GATACTATTGACAAT--GTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 12366521 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | |||||||| ||||| || |||| || | || | |||| ||||||||| Sbjct 12366522 AGCAAAGGCTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACA 12366581 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | ||| | || ||||| | ||||| || Sbjct 12366582 ACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGG 12366630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| |||||||| || || |||||| | || || || ||| | Sbjct 12367088 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 12367147 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| | | ||| | | || |||||||||||| |||| || | Sbjct 12367148 GACACTATTGACAATGTGAAGACCAAGATACAG--GACAAAGAAGGTATTCCCCCAGACC 12367205 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| || | || || | || | ||| | ||||| | Sbjct 12367206 AGCAAAGGTTGATATTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATA 12367265 Query 27968 ACATCCAAAAAGAG 27981 |||| || |||||| Sbjct 12367266 ACATTCAGAAAGAG 12367279 >seq4 Length=28907061 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||||||||||| || || || | || || || ||| | Sbjct 27565683 ATGCAGATTTTTGTGAAAACTCTTACTGGTAAGACAATAACTTTGGAGGTTGAGAGCTCA 27565742 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || ||| ||||| || || |||| ||| | Sbjct 27565743 GACACAATTGACAAT--GTGAAGGCTAAGATACAGGACAAGGAGGGCATTCCCCCGGATC 27565800 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | || | |||| ||||||||| Sbjct 27565801 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGAACCTTGGCCGATTACA 27565860 Query 27968 ACATCCAAAAAGA 27980 ||||||| || || Sbjct 27565861 ACATCCAGAAGGA 27565873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355693032962277