Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 seq28226 165 7e-36 seq4 82.4 7e-11 >seq2 Length=32560536 Score = 170 bits (188), Expect = 2e-37 Identities = 431/644 (67%), Gaps = 15/644 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || || || |||||||| || | | |||||| |||||| ||||||| Sbjct 19587674 ACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAATTCCATCCAATCAAAA 19587615 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT---CGGTCAGCT 4388 ||||| | || ||| ||||| ||| |||| || |||| | ||||| Sbjct 19587614 GGATTCTGAACATTATAAA--TTTTCCCACAACCAAGCT-CACCCAATAACCTATCAGCA 19587558 Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAG 4447 ||||| || |||||||| ||||| | ||| | ||| ||||||| || |||| || || Sbjct 19587557 ACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAAAG-CACAAGGAAG 19587499 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTT 4507 ||| | | ||| ||| || || || || || || ||| ||| | Sbjct 19587498 CGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAATAGTTTTCACACG 19587439 Query 4508 ATCTTTAGATGGTTTATTTACTAAGTATCCAAACAA-TAAACACGCAAAATCACAATGCA 4566 |||| | |||| ||| || | | | || || |||||| || ||||||||||| | Sbjct 19587438 CTCTTCACTAAGTTTCTTT-CTCAAAAGCGAATAAAGTAAACAAGCGAAATCACAATGAA 19587380 Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||||||| | ||| || ||||| ||||| ||||| || ||||||||||| | | Sbjct 19587379 GACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCATTAAACCACGTT 19587320 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 |||||||||| || || || ||| |||||||| ||||| ||||| || |||| Sbjct 19587319 TTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTCAACACAAGCAA 19587260 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 | || || | || | || || | | || |||||||| | ||||| | Sbjct 19587259 AAGCAACGATTCTTTCAGCAAATGAATCAGATGAATC---GATCCATTTCATAGCCCAAT 19587203 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAA 4806 |||||| ||| | |||||||| || | || || | ||| || | | || |||| Sbjct 19587202 CAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAACGATTCTTCTCAA 19587143 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 | || | |||||||| || || | || |||||||| |||||||| |||||||| | Sbjct 19587142 TAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATGAATATTTTCGA 19587083 Query 4867 TAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTG 4909 | || ||||| || ||||| |||||| | ||||| | ||||| Sbjct 19587082 TCGCGATCTGGAAACCGTAGAAAGCA-CGTGCTTCGGAGACTTG 19587040 >seq28226 Length=90112 Score = 165 bits (182), Expect = 7e-36 Identities = 273/392 (70%), Gaps = 13/392 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| |||||||| ||||| | |||||||| | ||| || || || ||||| ||| Sbjct 34797 AAACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTT 34738 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||||||||| | |||||||||||||| || || || ||||| || Sbjct 34737 AAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAA 34678 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCTGGCTTT 4720 ||||| ||||| || ||||| || || | || | | ||| || || | Sbjct 34677 AATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATCG 34618 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 |||||||| | ||||| | |||||| || ||| || ||||| || | || Sbjct 34617 -------ATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAAT 34565 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 |||| ||| || | | || |||| | || || |||||||| || || | || || Sbjct 34564 CGCGTGAAACAAACGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACT 34505 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTT 4899 |||||| |||||||| ||||| || || |||||||| |||||||| |||||| | || | Sbjct 34504 ATACATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCA-CGCGCCT 34446 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 ||| |||||||||||| || |||||| || Sbjct 34445 CTGATACTTGAACTTCTTTCATGAATCTTCCT 34414 >seq4 Length=28907061 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| || | ||| |||||||| || ||||| || || || || | Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || |||||||| ||||||||||||||||| ||||| || Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGC 2895679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426846352548983