Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq28226 206 4e-48 seq2 194 2e-44 seq3 136 6e-27 >seq28226 Length=90112 Score = 206 bits (228), Expect = 4e-48 Identities = 431/635 (68%), Gaps = 8/635 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || ||||| || || || ||||| ||||| |||||||| || | | || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| ||||| ||||||||||||||| | | | || | || | | Sbjct 35026 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAA 34967 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| ||||| || || |||||| |||||| |||| ||||||||| | | Sbjct 34966 CAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAA 34907 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || || || || || ||| || ||||| || || || | || Sbjct 34906 AGCGCAAGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACAAT 34847 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | || || ||||| || || | ||||| | | | || ||||| ||||| Sbjct 34846 TGTCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGCAAA 34787 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 ||| |||||||| ||||| || | ||| | || || ||||| || | |||||||| Sbjct 34786 ATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGGCAT 34727 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| ||||| |||||||| || || |||| |||||| || ||||| ||||| Sbjct 34726 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTTC 34667 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACC--TT 46815 ||| || || || || | || || || | || || |||| ||||||| | | || Sbjct 34666 AACACAAGCAAAAGCAACGA-TC-CTTTCAGCAAATGA-ATCAG-ATGAATCGATCCATT 34611 Query 46816 TGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 | | ||||||||||| || || | | |||||| || || || || || | ||| | | Sbjct 34610 TCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAAAC 34551 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || ||| || ||| | | ||| || || || || ||||||||||| || |||| Sbjct 34550 GATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGAAT 34491 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 |||| || || || || ||||| |||||||| ||| Sbjct 34490 GAATATTCTCGATCGCAATCTGGAATCCGTAGAAA 34456 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT 47099 ||||||||| || || | || ||| ||||||| |||| || || || || || Sbjct 34280 AGCAGCAAAGAAGGCAAGAACGTGTGAGATAAAATGGCGTTCACCGTCGGTTAGGTTGTT 34221 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||||| || ||||| |||| ||| |||||||| || ||||||||||| || ||||| Sbjct 34220 CCAGTGATGAGGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCTGC 34161 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATA 47205 |||||| ||||| | ||| || | | | ||||| || || || ||| Sbjct 34160 TTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 34115 >seq2 Length=32560536 Score = 194 bits (214), Expect = 2e-44 Identities = 434/646 (67%), Gaps = 8/646 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || || ||||| ||||| |||||||| || | | || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| ||||||| ||||| ||||||||||||||| | | || | || | Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 | ||||| ||||| || || |||||| |||||| ||||| |||||||| | | Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || || || || ||| ||| ||||| || ||||| | || Sbjct 19587510 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAAT 19587451 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | | || || ||||| || | ||||| | | | | |||||| || || Sbjct 19587450 AGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGAA 19587391 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||||||||||| ||||| || | ||| | ||||| ||||| || | |||||||| Sbjct 19587390 ATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 19587331 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| ||||| ||||| || || || ||| ||||||||| ||||| ||||| Sbjct 19587330 TAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTC 19587271 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA-CCTTT 46816 ||| || || || || | ||| || | || | | |||| ||||||| | || || Sbjct 19587270 AACACAAGCAAAAGCAAC--GATTCTTTCAGCAAAT-GAATCA-GATGAATCGATCCATT 19587215 Query 46817 ---GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 |||||||||||| || ||| | ||| || || || || || |||| ||| | | Sbjct 19587214 TCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAAC 19587155 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || ||| | ||| || | ||| || || || || ||||||||||| || |||| Sbjct 19587154 GATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAAT 19587095 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 |||| ||||| || || ||||| || ||||| ||| | |||||| Sbjct 19587094 GAATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCACGTGCTTC 19587049 >seq3 Length=31061273 Score = 136 bits (150), Expect = 6e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||||||||| | ||| | |||||||| ||| | || | ||||||||||| ||| || Sbjct 3456868 CCTCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACCA 3456809 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || ||||||||||| ||| ||||| ||| | ||||| || ||| || ||| Sbjct 3456808 TTAGAAGTCCCATTTGTTCCGCGAATGTAACTGCCATAGGCACGTATGTTATGAACAGAA 3456749 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| |||| || | |||||| |||||||| || || || Sbjct 3456748 ACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCGTAAATC 3456689 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||| |||||||| || |||| Sbjct 3456688 CCCTCAATACTATCCTCTTTCAT 3456666 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 ||||||| || ||||| | | |||||||| || |||||| ||| |||||||||| Sbjct 3457341 TTTCATACTGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTG 3457282 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 |||||| || || | || ||||| | |||| || ||| | ||||||||||||| Sbjct 3457281 CTTCATTGGGGCAAAACACGGACCATACCCCATTGCTCTGAACTCTGTTCATAAAGAGAT 3457222 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||| | ||| |||||| |||| |||||| Sbjct 3457221 CAGGAACCCAAAGAGCATAGAATAAATCTCG 3457191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712586389984320